miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 3205 0.66 0.894709
Target:  5'- -aGGUU--GCGGCGGCGGuuggauggcgUGGGCGCGu -3'
miRNA:   3'- uaCCAAcuCGUCGCUGUU----------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 108237 0.66 0.894709
Target:  5'- uUGGacGAGC-GCGuCAACGGGCuGCu -3'
miRNA:   3'- uACCaaCUCGuCGCuGUUGCCCG-UGu -5'
6764 3' -55.3 NC_001875.2 + 5922 0.66 0.894709
Target:  5'- cAUGGcgUUGGGUAGCGccGCGcaggUGGGCGCGg -3'
miRNA:   3'- -UACC--AACUCGUCGC--UGUu---GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 117872 0.66 0.887785
Target:  5'- -aGGUUGAGCAGCGuuggcCAGCuuaGGCu-- -3'
miRNA:   3'- uaCCAACUCGUCGCu----GUUGc--CCGugu -5'
6764 3' -55.3 NC_001875.2 + 130920 0.66 0.887785
Target:  5'- -cGGUcacGGCAGUGGCGGCGGuuuGCGCc -3'
miRNA:   3'- uaCCAac-UCGUCGCUGUUGCC---CGUGu -5'
6764 3' -55.3 NC_001875.2 + 130102 0.66 0.880621
Target:  5'- -cGGaaauGGCGGCGGCGGC-GGCGCGa -3'
miRNA:   3'- uaCCaac-UCGUCGCUGUUGcCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 130058 0.66 0.880621
Target:  5'- aAUGGc--GGCGGCGGCGGC-GGCAUg -3'
miRNA:   3'- -UACCaacUCGUCGCUGUUGcCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 42191 0.66 0.880621
Target:  5'- -cGGUUGGGCguuucaaauAGCGcGCGGC-GGCACGc -3'
miRNA:   3'- uaCCAACUCG---------UCGC-UGUUGcCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 102865 0.66 0.880621
Target:  5'- -aGGUUGGGCAGCGGCAcuuUGucCACc -3'
miRNA:   3'- uaCCAACUCGUCGCUGUu--GCccGUGu -5'
6764 3' -55.3 NC_001875.2 + 115434 0.66 0.87916
Target:  5'- -cGGUUuGGCGGCGACgaacaccgcaccuAccgcguugagcuaGCGGGCGCGg -3'
miRNA:   3'- uaCCAAcUCGUCGCUG-------------U-------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 121948 0.66 0.878426
Target:  5'- uGUGGUgcgcgcGGCAGCGuugcaGCGuauucaaaaagcugGCGGGCACGu -3'
miRNA:   3'- -UACCAac----UCGUCGC-----UGU--------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 12963 0.66 0.873222
Target:  5'- -aGGUUG-GUcGCGAC-ACGGGCGu- -3'
miRNA:   3'- uaCCAACuCGuCGCUGuUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 72571 0.66 0.873222
Target:  5'- -cGGgcgcGGGCGcuGCGGguGCGGGCGCu -3'
miRNA:   3'- uaCCaa--CUCGU--CGCUguUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 127453 0.66 0.865594
Target:  5'- gAUGGccgauUUGAGCAGCGcGCcACGcGGCAaCAu -3'
miRNA:   3'- -UACC-----AACUCGUCGC-UGuUGC-CCGU-GU- -5'
6764 3' -55.3 NC_001875.2 + 57687 0.66 0.865594
Target:  5'- ------aAGCuGGCGGCGGCGGGCGCc -3'
miRNA:   3'- uaccaacUCG-UCGCUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 129967 0.66 0.857741
Target:  5'- -cGGcgGcGGCGGCGGCGGCGgcGGCAUg -3'
miRNA:   3'- uaCCaaC-UCGUCGCUGUUGC--CCGUGu -5'
6764 3' -55.3 NC_001875.2 + 89308 0.66 0.857741
Target:  5'- cGUGGagaugucGAGCGGC-ACGACGGGCcuCAg -3'
miRNA:   3'- -UACCaa-----CUCGUCGcUGUUGCCCGu-GU- -5'
6764 3' -55.3 NC_001875.2 + 106020 0.66 0.857741
Target:  5'- cUGGgcGuuGCAGUGcuCGGCGGGCGCc -3'
miRNA:   3'- uACCaaCu-CGUCGCu-GUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 28826 0.66 0.856944
Target:  5'- -cGGUgaccgucaGGGUGGCcgacacgGACGGCGGGCACu -3'
miRNA:   3'- uaCCAa-------CUCGUCG-------CUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 40273 0.66 0.855343
Target:  5'- -cGGUcgcguuuccguacgUG-GCGGCgGGCAACGGGCuGCAc -3'
miRNA:   3'- uaCCA--------------ACuCGUCG-CUGUUGCCCG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.