miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 57300 0.66 0.916844
Target:  5'- aACGCgaacgGGCGCGcgucgucGGCGACGCAauuguugcgGCAGc -3'
miRNA:   3'- gUGUGaa---CCGCGU-------UCGCUGUGU---------CGUU- -5'
6765 3' -54.1 NC_001875.2 + 108028 0.66 0.916844
Target:  5'- gACAC--GGCGCGcccgacgccgcggAGCGACACgucGGCGAc -3'
miRNA:   3'- gUGUGaaCCGCGU-------------UCGCUGUG---UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 101078 0.66 0.911314
Target:  5'- ---gUUUGGCGUggGCGGagcuaUACAGCGAc -3'
miRNA:   3'- guguGAACCGCGuuCGCU-----GUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 121891 0.66 0.911314
Target:  5'- cCACGCUgucgucgacGCGCAGaucGgGGCACAGCAu -3'
miRNA:   3'- -GUGUGAac-------CGCGUU---CgCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 70760 0.66 0.911314
Target:  5'- aCAUGCaaGaCGCGGGCGGCGCAGUu- -3'
miRNA:   3'- -GUGUGaaCcGCGUUCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 65787 0.66 0.911314
Target:  5'- aCGCGCgcGGCGUcGGCGcgcggugccuGCGCGGCGc -3'
miRNA:   3'- -GUGUGaaCCGCGuUCGC----------UGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 109994 0.66 0.911314
Target:  5'- aCGCGCggucggUGGCGUugacGCGcGCGCAGCu- -3'
miRNA:   3'- -GUGUGa-----ACCGCGuu--CGC-UGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 129460 0.66 0.909424
Target:  5'- gGCACUgGGCGCAGcuGuCGgacuccaacaugccGCACAGCAAc -3'
miRNA:   3'- gUGUGAaCCGCGUU--C-GC--------------UGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 120791 0.66 0.908789
Target:  5'- aACGCUgguauccaacaaGCGCAAaCGGCGCAGCAGc -3'
miRNA:   3'- gUGUGAac----------CGCGUUcGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 18481 0.66 0.904923
Target:  5'- uGCGCc--GCGCcgcAGCGACGCAGCc- -3'
miRNA:   3'- gUGUGaacCGCGu--UCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 80869 0.66 0.904923
Target:  5'- aGCgACUcGGCGCGcgccaaagAGUGGCAgAGCAAg -3'
miRNA:   3'- gUG-UGAaCCGCGU--------UCGCUGUgUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 82247 0.66 0.904923
Target:  5'- gCGCGC-UGGUGguAGCGcucgucggcGCGCAGCu- -3'
miRNA:   3'- -GUGUGaACCGCguUCGC---------UGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 24435 0.66 0.904923
Target:  5'- aACGCgcgGGCGuCGAGCGAauCGGCGu -3'
miRNA:   3'- gUGUGaa-CCGC-GUUCGCUguGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 69014 0.66 0.904923
Target:  5'- aGCACguggUGGCGCGcugcccCGAC-CAGCAGg -3'
miRNA:   3'- gUGUGa---ACCGCGUuc----GCUGuGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 5504 0.66 0.898275
Target:  5'- aGCACgaccGGCGCAcGCG-CGCAGUu- -3'
miRNA:   3'- gUGUGaa--CCGCGUuCGCuGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 46374 0.66 0.898275
Target:  5'- cCGCAgCUgcuGCGCAugugcAGCGACACGGUg- -3'
miRNA:   3'- -GUGU-GAac-CGCGU-----UCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 41595 0.66 0.898275
Target:  5'- gACGCcgaaGGCGCGGGCGcggGCGCGGgCAu -3'
miRNA:   3'- gUGUGaa--CCGCGUUCGC---UGUGUC-GUu -5'
6765 3' -54.1 NC_001875.2 + 72608 0.66 0.897596
Target:  5'- uCGCGCUcGGCGUuaagcuuGGCGACguaaucgGCGGCGg -3'
miRNA:   3'- -GUGUGAaCCGCGu------UCGCUG-------UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 101963 0.66 0.891373
Target:  5'- gGCGCcggUGGCGaacGCGACGCAGgCGu -3'
miRNA:   3'- gUGUGa--ACCGCguuCGCUGUGUC-GUu -5'
6765 3' -54.1 NC_001875.2 + 36574 0.66 0.891373
Target:  5'- cCACGCgcGGCuguuGCAAaauGCGGCGCAGCc- -3'
miRNA:   3'- -GUGUGaaCCG----CGUU---CGCUGUGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.