Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6768 | 3' | -57.7 | NC_001875.2 | + | 91558 | 1.07 | 0.002314 |
Target: 5'- cCCGUUGCCCGCCGCCACGUACGGAAAc -3' miRNA: 3'- -GGCAACGGGCGGCGGUGCAUGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 31250 | 0.67 | 0.787112 |
Target: 5'- gCCGgcGCCCGgC-CCGCGUACGc--- -3' miRNA: 3'- -GGCaaCGGGCgGcGGUGCAUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 63281 | 0.66 | 0.821527 |
Target: 5'- gCGgUGCgcgaccgCCGCCGCCGCG-GCGGcAAAc -3' miRNA: 3'- gGCaACG-------GGCGGCGGUGCaUGCC-UUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 46476 | 0.66 | 0.839829 |
Target: 5'- gCGuUUGCCaacgcgaaCGCCGCCACGgcgucggcguucgcgGCGGGc- -3' miRNA: 3'- gGC-AACGG--------GCGGCGGUGCa--------------UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 83456 | 0.7 | 0.578991 |
Target: 5'- gCCGgcaCCUGUCGCCGCGU-CGGAc- -3' miRNA: 3'- -GGCaacGGGCGGCGGUGCAuGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 26873 | 0.7 | 0.599218 |
Target: 5'- gCCGUgcaccaGCCCGCCGCCGCacACGa--- -3' miRNA: 3'- -GGCAa-----CGGGCGGCGGUGcaUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 66077 | 0.7 | 0.619541 |
Target: 5'- gCCGccGCCCGCCGCgCACGaaUACGccGAGg -3' miRNA: 3'- -GGCaaCGGGCGGCG-GUGC--AUGC--CUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 89988 | 0.69 | 0.639902 |
Target: 5'- uUGUUGCagcuCGCCGCCGCGgcGCGGc-- -3' miRNA: 3'- gGCAACGg---GCGGCGGUGCa-UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 110635 | 0.68 | 0.720436 |
Target: 5'- cCCGUuuUGUUgGCCGCCaaACGUugcgaGCGGGAGc -3' miRNA: 3'- -GGCA--ACGGgCGGCGG--UGCA-----UGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 92717 | 0.67 | 0.77793 |
Target: 5'- gCCGgucaggGUcgUCGCCGCCAUGgagcGCGGAAc -3' miRNA: 3'- -GGCaa----CG--GGCGGCGGUGCa---UGCCUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 68953 | 0.67 | 0.750602 |
Target: 5'- gUCGUUGUcuuCCGgCGCCACGcauuugcacagcaagGCGGAAAc -3' miRNA: 3'- -GGCAACG---GGCgGCGGUGCa--------------UGCCUUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 49388 | 0.68 | 0.720436 |
Target: 5'- aCCGUU-CCUGCCGCCGCGaACu---- -3' miRNA: 3'- -GGCAAcGGGCGGCGGUGCaUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 104128 | 0.79 | 0.190133 |
Target: 5'- gCGUUGCCCGUCGCCucguUGUGCGGc-- -3' miRNA: 3'- gGCAACGGGCGGCGGu---GCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 92023 | 0.67 | 0.759186 |
Target: 5'- aCCGUgccaaaGUCgGCCGCCgACGUccACGGGc- -3' miRNA: 3'- -GGCAa-----CGGgCGGCGG-UGCA--UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 23755 | 0.72 | 0.471672 |
Target: 5'- aCGcUUGUCCGCCGCCuCGUACGc--- -3' miRNA: 3'- gGC-AACGGGCGGCGGuGCAUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 98704 | 0.68 | 0.680485 |
Target: 5'- gCUGUUGCCCuGCCGCCAUuuuuguguGUGCa---- -3' miRNA: 3'- -GGCAACGGG-CGGCGGUG--------CAUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 33950 | 0.67 | 0.768618 |
Target: 5'- gCCGacGCCCGCaacguGCC-CGUGCGGc-- -3' miRNA: 3'- -GGCaaCGGGCGg----CGGuGCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 118877 | 0.67 | 0.787112 |
Target: 5'- gCGgaGCCCacgcGCCGCCGCG-ACGaGAc- -3' miRNA: 3'- gGCaaCGGG----CGGCGGUGCaUGC-CUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 18237 | 0.71 | 0.539037 |
Target: 5'- gCCGcgGCCCGCCGCCGacucgaacgcCGUGCuGGc-- -3' miRNA: 3'- -GGCaaCGGGCGGCGGU----------GCAUG-CCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 40578 | 0.7 | 0.619541 |
Target: 5'- -aGUUGCCCGCgCGCUACGUAa----- -3' miRNA: 3'- ggCAACGGGCG-GCGGUGCAUgccuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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