miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 91375 1.09 0.000462
Target:  5'- gACGCCCGGCACCACCACGCCCUCGGGg -3'
miRNA:   3'- -UGCGGGCCGUGGUGGUGCGGGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 89518 0.69 0.352457
Target:  5'- cCGCCUGGgGCCGCUggGCGCgCUCGa- -3'
miRNA:   3'- uGCGGGCCgUGGUGG--UGCGgGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 92772 0.69 0.367498
Target:  5'- gACGCCgCGGCGCacaaugGCCAUGCgCUUGcGGu -3'
miRNA:   3'- -UGCGG-GCCGUGg-----UGGUGCGgGAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 121450 0.65 0.548081
Target:  5'- cGCGCCaCGGCGCgGCgGCGUUCaaaguuuUCGGc -3'
miRNA:   3'- -UGCGG-GCCGUGgUGgUGCGGG-------AGCCc -5'
6769 5' -64.4 NC_001875.2 + 25818 0.73 0.187705
Target:  5'- gGCGCCCGccgaGCACUGCaACGCCCagaugaagUCGGGg -3'
miRNA:   3'- -UGCGGGC----CGUGGUGgUGCGGG--------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 77397 0.72 0.216102
Target:  5'- gGCGCCgCGGCuaacgACCGCCACGCgCUguUCGGc -3'
miRNA:   3'- -UGCGG-GCCG-----UGGUGGUGCG-GG--AGCCc -5'
6769 5' -64.4 NC_001875.2 + 98620 0.72 0.226355
Target:  5'- gGCGCCCGGCGagcCCGCGCCCgcguuugcCGGc -3'
miRNA:   3'- -UGCGGGCCGUgguGGUGCGGGa-------GCCc -5'
6769 5' -64.4 NC_001875.2 + 46550 0.72 0.231635
Target:  5'- cGCGCCC-GCGCCGcCCGCGCaaaccgugUUCGGGg -3'
miRNA:   3'- -UGCGGGcCGUGGU-GGUGCGg-------GAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 105908 0.71 0.253799
Target:  5'- -gGCgCGGCgGCCACCACGaaaaaCUCGGGc -3'
miRNA:   3'- ugCGgGCCG-UGGUGGUGCgg---GAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 77110 0.69 0.345102
Target:  5'- uGCGCCCgcacGGCuACCuguCCACGCCCgUCGc- -3'
miRNA:   3'- -UGCGGG----CCG-UGGu--GGUGCGGG-AGCcc -5'
6769 5' -64.4 NC_001875.2 + 93338 0.71 0.283918
Target:  5'- uGCGacaCCaGCACCACCuuGUCgUCGGGa -3'
miRNA:   3'- -UGCg--GGcCGUGGUGGugCGGgAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 130813 0.71 0.253224
Target:  5'- uGCGCCUcgGGCcCCGCCACGCgCUgcaagaaCGGGc -3'
miRNA:   3'- -UGCGGG--CCGuGGUGGUGCGgGA-------GCCC- -5'
6769 5' -64.4 NC_001875.2 + 50498 0.74 0.162645
Target:  5'- uGCGCgCGGCACCAgCGCGCCgCgCGGc -3'
miRNA:   3'- -UGCGgGCCGUGGUgGUGCGG-GaGCCc -5'
6769 5' -64.4 NC_001875.2 + 33689 0.7 0.309996
Target:  5'- -gGCCCGacguGCGCCGCC-CGCUgaUCGGGu -3'
miRNA:   3'- ugCGGGC----CGUGGUGGuGCGGg-AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 9711 0.74 0.170645
Target:  5'- uGCGCgCCGGC-CgCGCCGCGCCCgaagCGuGGc -3'
miRNA:   3'- -UGCG-GGCCGuG-GUGGUGCGGGa---GC-CC- -5'
6769 5' -64.4 NC_001875.2 + 44591 0.72 0.241953
Target:  5'- gGCGUCCaauuuuuGGC-CCAgCGCGCgCUCGGGg -3'
miRNA:   3'- -UGCGGG-------CCGuGGUgGUGCGgGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 94728 0.7 0.330725
Target:  5'- aACGCCgGcGCGgCGCCGCGCCCgcacacccacgCGGcGg -3'
miRNA:   3'- -UGCGGgC-CGUgGUGGUGCGGGa----------GCC-C- -5'
6769 5' -64.4 NC_001875.2 + 128405 0.69 0.352457
Target:  5'- uGCGUuuGGUgcgACgACCAgCGCUCUUGGGa -3'
miRNA:   3'- -UGCGggCCG---UGgUGGU-GCGGGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 18278 0.74 0.178995
Target:  5'- gGCGCgCCGuGCGCgACCGCGCCguugaUUGGGa -3'
miRNA:   3'- -UGCG-GGC-CGUGgUGGUGCGGg----AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 57531 0.72 0.226355
Target:  5'- cUGUCCGGCGCCugCGCGCCgUaGGc -3'
miRNA:   3'- uGCGGGCCGUGGugGUGCGGgAgCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.