miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 5' -50.2 NC_001875.2 + 100586 0.66 0.996983
Target:  5'- cGUCGacgcgUACGcg-GGCCGgGCGcCGGc -3'
miRNA:   3'- -CAGCaa---AUGCaaaCUGGCgCGCuGCC- -5'
6773 5' -50.2 NC_001875.2 + 54315 0.66 0.996983
Target:  5'- cGUCaaaauugGCGgucGugCGCGUGACGGu -3'
miRNA:   3'- -CAGcaaa---UGCaaaCugGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 98494 0.66 0.996983
Target:  5'- -cCGcgUGCGUgaUUGGCUGCcggGCGACGa -3'
miRNA:   3'- caGCaaAUGCA--AACUGGCG---CGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 72045 0.66 0.996445
Target:  5'- gGUCGUUgACGUUUGuaaGCGCuGCGa -3'
miRNA:   3'- -CAGCAAaUGCAAACuggCGCGcUGCc -5'
6773 5' -50.2 NC_001875.2 + 1054 0.66 0.99583
Target:  5'- -gCGUUgggcgcaACGUUggcGACCGCGCGGucaGGc -3'
miRNA:   3'- caGCAAa------UGCAAa--CUGGCGCGCUg--CC- -5'
6773 5' -50.2 NC_001875.2 + 123358 0.66 0.99583
Target:  5'- -aCGgcgcccgGCGUggUGuuuCCGCGCGACGu -3'
miRNA:   3'- caGCaaa----UGCAa-ACu--GGCGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 98215 0.66 0.99583
Target:  5'- cGUCGUcga-GUUUGugCaCGCGACGc -3'
miRNA:   3'- -CAGCAaaugCAAACugGcGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 86135 0.66 0.99583
Target:  5'- aUCGgcagUGCGc--GGCgCGCGCGGCGa -3'
miRNA:   3'- cAGCaa--AUGCaaaCUG-GCGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 83001 0.66 0.99583
Target:  5'- cGUCGaaauacgGCGUcagcugGACCGCGCGcaGCGa -3'
miRNA:   3'- -CAGCaaa----UGCAaa----CUGGCGCGC--UGCc -5'
6773 5' -50.2 NC_001875.2 + 42192 0.66 0.995131
Target:  5'- gGUUGg--GCGUUUcaaauAgCGCGCGGCGGc -3'
miRNA:   3'- -CAGCaaaUGCAAAc----UgGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 113609 0.66 0.995056
Target:  5'- aGUCG---GCGgcgGGCCGCggcggcaagagcgGCGACGGc -3'
miRNA:   3'- -CAGCaaaUGCaaaCUGGCG-------------CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 27694 0.66 0.994339
Target:  5'- aUCGcgccgcCGUUUGAgCCGCacaacgagGCGACGGg -3'
miRNA:   3'- cAGCaaau--GCAAACU-GGCG--------CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 90676 0.66 0.994339
Target:  5'- -gCGUUgcUGCGgaUGACCuCGaCGAUGGg -3'
miRNA:   3'- caGCAA--AUGCaaACUGGcGC-GCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 7029 0.66 0.994339
Target:  5'- -aCGUaaGCGaggUGGCCGCGCGcuuguCGGc -3'
miRNA:   3'- caGCAaaUGCaa-ACUGGCGCGCu----GCC- -5'
6773 5' -50.2 NC_001875.2 + 85855 0.67 0.993447
Target:  5'- uGUUGUgcACGgcgagUUcGCCGCaGCGGCGGc -3'
miRNA:   3'- -CAGCAaaUGCa----AAcUGGCG-CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 49349 0.67 0.993447
Target:  5'- -gCGUggGCGgcgGGCCGUggugcaacauGCGGCGGc -3'
miRNA:   3'- caGCAaaUGCaaaCUGGCG----------CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 98168 0.67 0.992445
Target:  5'- cGUCGggc-CGUUUGuuuuaccacGCCGC-CGACGGc -3'
miRNA:   3'- -CAGCaaauGCAAAC---------UGGCGcGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 73634 0.67 0.991325
Target:  5'- -gCGgcUGCGgc-GGCUGCuGCGGCGGc -3'
miRNA:   3'- caGCaaAUGCaaaCUGGCG-CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 82032 0.67 0.991325
Target:  5'- -aCGggUACGUg-GACauCGCGGCGGg -3'
miRNA:   3'- caGCaaAUGCAaaCUGgcGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 81329 0.67 0.991325
Target:  5'- cUCGUcauCGU---GCCGCGCGGCGc -3'
miRNA:   3'- cAGCAaauGCAaacUGGCGCGCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.