miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 36421 0.66 0.997424
Target:  5'- gCGCCg--CGAGGCcuuaccuUUGcgacgccGGCGCGCu -3'
miRNA:   3'- -GCGGaaaGUUUCGu------AACaa-----CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 89555 0.66 0.997424
Target:  5'- gCGCCg--CGGGuGCccagUGUUGGCGagaGCg -3'
miRNA:   3'- -GCGGaaaGUUU-CGua--ACAACCGCg--CG- -5'
6775 3' -49.2 NC_001875.2 + 14593 0.66 0.997424
Target:  5'- uGCCUgcaaaAAGGaaaauaGUUGUggggccuguuccUGGCGCGCc -3'
miRNA:   3'- gCGGAaag--UUUCg-----UAACA------------ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 112822 0.66 0.997424
Target:  5'- aCGCCgcgcacgugCAAAGCGc-GUUGcggccuGCGCGCa -3'
miRNA:   3'- -GCGGaaa------GUUUCGUaaCAAC------CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 89518 0.66 0.997424
Target:  5'- cCGCCU---GGGGCcgcug-GGCGCGCu -3'
miRNA:   3'- -GCGGAaagUUUCGuaacaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 105239 0.66 0.997424
Target:  5'- gGCCUgUCAuGGCGccaggUGUgcgGGCGCu- -3'
miRNA:   3'- gCGGAaAGUuUCGUa----ACAa--CCGCGcg -5'
6775 3' -49.2 NC_001875.2 + 93021 0.66 0.997236
Target:  5'- uCGCCgcgCAacugcacaaccacGAGCAauugcagcgccgaaUUGcgGGCGCGCu -3'
miRNA:   3'- -GCGGaaaGU-------------UUCGU--------------AACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 102428 0.66 0.996934
Target:  5'- uCGCCguugCcGAGCGccggGUUGGCGCc- -3'
miRNA:   3'- -GCGGaaa-GuUUCGUaa--CAACCGCGcg -5'
6775 3' -49.2 NC_001875.2 + 81140 0.66 0.996934
Target:  5'- gGCCUgcac--GCAcaUGUUGGUGUGCu -3'
miRNA:   3'- gCGGAaaguuuCGUa-ACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 5915 0.66 0.996934
Target:  5'- gCGCCgg-CAuGGCGUUGgguaGCGcCGCg -3'
miRNA:   3'- -GCGGaaaGUuUCGUAACaac-CGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 123003 0.66 0.996934
Target:  5'- gCGCCag-CugaauGAGUuggUGUUgGGCGCGCc -3'
miRNA:   3'- -GCGGaaaGu----UUCGua-ACAA-CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 113334 0.66 0.99637
Target:  5'- gGCUUUUCGugcGGCGggucgGGCGCGg -3'
miRNA:   3'- gCGGAAAGUu--UCGUaacaaCCGCGCg -5'
6775 3' -49.2 NC_001875.2 + 100129 0.66 0.99637
Target:  5'- uCGCCgaaagUAAuGCGccGgcGGCGCGCa -3'
miRNA:   3'- -GCGGaaa--GUUuCGUaaCaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 113060 0.66 0.99637
Target:  5'- uGCCcacuaCAGAGCuggcuUUGaUGGCGaCGCg -3'
miRNA:   3'- gCGGaaa--GUUUCGu----AACaACCGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 131672 0.66 0.99637
Target:  5'- aGCUug-CAGAGCcacgUGUUuGGCGcCGCg -3'
miRNA:   3'- gCGGaaaGUUUCGua--ACAA-CCGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 81468 0.66 0.995723
Target:  5'- aCGCUggUCc--GCGgucagUGGCGCGCg -3'
miRNA:   3'- -GCGGaaAGuuuCGUaaca-ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 82041 0.66 0.995723
Target:  5'- aGCCa---GAAGUuuGUUGggGGCgGCGCg -3'
miRNA:   3'- gCGGaaagUUUCG--UAACaaCCG-CGCG- -5'
6775 3' -49.2 NC_001875.2 + 32323 0.66 0.995723
Target:  5'- gCGCUUUUUAuAGUAauuugGUUucuauaaaaGGCGCGCa -3'
miRNA:   3'- -GCGGAAAGUuUCGUaa---CAA---------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 98321 0.66 0.995723
Target:  5'- uGCauccgUUCAAcguGCAcaUGUUGGCGCuGCg -3'
miRNA:   3'- gCGga---AAGUUu--CGUa-ACAACCGCG-CG- -5'
6775 3' -49.2 NC_001875.2 + 94445 0.66 0.995583
Target:  5'- gCGCCgUUCGAacggcGGCAgcGgaaacugcagcGGCGCGCg -3'
miRNA:   3'- -GCGGaAAGUU-----UCGUaaCaa---------CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.