miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 3' -60.2 NC_001875.2 + 126815 0.66 0.69366
Target:  5'- aGCCaauaauggagaccgaGGCGGCGcaaagugcacaaGuGCCGCACAGCaGCGa -3'
miRNA:   3'- -CGG---------------UCGUCGC------------C-CGGCGUGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 88891 0.66 0.69366
Target:  5'- cGCgCuGC-GCGGGCUGCugAcgcacgccacguuugACUGCGa -3'
miRNA:   3'- -CG-GuCGuCGCCCGGCGugU---------------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 42952 0.66 0.689658
Target:  5'- cGUCAGCAGC---CCGCGCAGC-GCGc -3'
miRNA:   3'- -CGGUCGUCGcccGGCGUGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 32002 0.66 0.689658
Target:  5'- uGUgAGCGGCGGcgacGCaGCGC-ACUGCGa -3'
miRNA:   3'- -CGgUCGUCGCC----CGgCGUGuUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 7265 0.66 0.689658
Target:  5'- gGCCuGGC-GCGGGUCGC-CGAC-GUGUu -3'
miRNA:   3'- -CGG-UCGuCGCCCGGCGuGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 96305 0.66 0.689658
Target:  5'- gGCCGGguGgGcGGCCaGCACcguGGCcGCGUc -3'
miRNA:   3'- -CGGUCguCgC-CCGG-CGUG---UUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 81756 0.66 0.689658
Target:  5'- uCC-GCGGCGGGCCGCguACGAaaucauccGCGa -3'
miRNA:   3'- cGGuCGUCGCCCGGCG--UGUUga------CGCa -5'
6776 3' -60.2 NC_001875.2 + 81311 0.66 0.688656
Target:  5'- cGCCGGCGGCGccuccuccucGucaucguGCCGCGCGGC-GCGc -3'
miRNA:   3'- -CGGUCGUCGC----------C-------CGGCGUGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 57688 0.66 0.679621
Target:  5'- aGCUGGCGGCGGcgggcGCCGCGCccucgaacuccAGCUcuagGCGa -3'
miRNA:   3'- -CGGUCGUCGCC-----CGGCGUG-----------UUGA----CGCa -5'
6776 3' -60.2 NC_001875.2 + 121898 0.66 0.679621
Target:  5'- aGCCGGC-GUGGGCaGCACcGCUagaauacuuGCGg -3'
miRNA:   3'- -CGGUCGuCGCCCGgCGUGuUGA---------CGCa -5'
6776 3' -60.2 NC_001875.2 + 38598 0.66 0.679621
Target:  5'- gGCCAGCuGCGcgucgaGGagCGCACcGCUGUGg -3'
miRNA:   3'- -CGGUCGuCGC------CCg-GCGUGuUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 47678 0.66 0.679621
Target:  5'- gGCC-GCGGCGcGCCGCGCGuuuCUcaacGCGg -3'
miRNA:   3'- -CGGuCGUCGCcCGGCGUGUu--GA----CGCa -5'
6776 3' -60.2 NC_001875.2 + 121265 0.66 0.669545
Target:  5'- -gCAGCAGCugcacguuGUCGCGCAGCUGCc- -3'
miRNA:   3'- cgGUCGUCGcc------CGGCGUGUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 57152 0.66 0.669545
Target:  5'- cGCCAaCGGCGGGUCGaaaAACUGUu- -3'
miRNA:   3'- -CGGUcGUCGCCCGGCgugUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 91020 0.66 0.669545
Target:  5'- uGCCcaCGGCcGGCCGgaACGACUGUGUg -3'
miRNA:   3'- -CGGucGUCGcCCGGCg-UGUUGACGCA- -5'
6776 3' -60.2 NC_001875.2 + 48541 0.66 0.669545
Target:  5'- cGCCGGU-GCuGGGCC--ACGugUGCGUg -3'
miRNA:   3'- -CGGUCGuCG-CCCGGcgUGUugACGCA- -5'
6776 3' -60.2 NC_001875.2 + 92735 0.66 0.666516
Target:  5'- cGCCAuggagcgcggaacuGCAGCGuuGGCacaGCACGACgccGCGg -3'
miRNA:   3'- -CGGU--------------CGUCGC--CCGg--CGUGUUGa--CGCa -5'
6776 3' -60.2 NC_001875.2 + 92991 0.66 0.663485
Target:  5'- aCgAGCAgaugaacuccauuucGCGGucugucGCCGCGCAACUGCa- -3'
miRNA:   3'- cGgUCGU---------------CGCC------CGGCGUGUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 52545 0.66 0.65944
Target:  5'- aCCAGCAaaCuGGUCGCGCAACaUGCGc -3'
miRNA:   3'- cGGUCGUc-GcCCGGCGUGUUG-ACGCa -5'
6776 3' -60.2 NC_001875.2 + 48281 0.66 0.65944
Target:  5'- cGCCAugaaauGCaAGUGGGCgUGUuuGCGACUGCGc -3'
miRNA:   3'- -CGGU------CG-UCGCCCG-GCG--UGUUGACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.