miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 5' -48.4 NC_001875.2 + 109831 0.66 0.998969
Target:  5'- uGugGAU-UGG-GCAGUGCcg-GCGGa -3'
miRNA:   3'- gCugUUGuACCaCGUCAUGaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 87549 0.66 0.998948
Target:  5'- aCGAgGGCAUGGUGUgcauagccaaaagGGUGCgcauugGCGc -3'
miRNA:   3'- -GCUgUUGUACCACG-------------UCAUGaaa---CGCc -5'
6776 5' -48.4 NC_001875.2 + 55554 0.66 0.998766
Target:  5'- aCGACAugGUGGcuacgcgcgaaaaaaGCAGUcuggAUUUUGUGGc -3'
miRNA:   3'- -GCUGUugUACCa--------------CGUCA----UGAAACGCC- -5'
6776 5' -48.4 NC_001875.2 + 92015 0.66 0.998741
Target:  5'- uGGCGGCGUu-UGC-GUACUUUGCGa -3'
miRNA:   3'- gCUGUUGUAccACGuCAUGAAACGCc -5'
6776 5' -48.4 NC_001875.2 + 42533 0.66 0.998471
Target:  5'- cCGAagcGCAUGGUgGCGGcGCcaUGCGGc -3'
miRNA:   3'- -GCUgu-UGUACCA-CGUCaUGaaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 65693 0.66 0.998154
Target:  5'- -cGCAGCAaGGUGUGGUGCguguacauugUGCGa -3'
miRNA:   3'- gcUGUUGUaCCACGUCAUGaa--------ACGCc -5'
6776 5' -48.4 NC_001875.2 + 81658 0.66 0.998154
Target:  5'- uCGACAACAcGcUGCuGUACgggacgcacgUGCGGa -3'
miRNA:   3'- -GCUGUUGUaCcACGuCAUGaa--------ACGCC- -5'
6776 5' -48.4 NC_001875.2 + 100502 0.67 0.997784
Target:  5'- aGACGACAUGGU-CGG-GCUgcGCGu -3'
miRNA:   3'- gCUGUUGUACCAcGUCaUGAaaCGCc -5'
6776 5' -48.4 NC_001875.2 + 48493 0.67 0.997784
Target:  5'- cCGACGACAU-GUGUAGcg---UGCGGc -3'
miRNA:   3'- -GCUGUUGUAcCACGUCaugaaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 50350 0.67 0.997353
Target:  5'- gGGCGACGaGGaauacGCAGUGaacagUUUGCGGg -3'
miRNA:   3'- gCUGUUGUaCCa----CGUCAUg----AAACGCC- -5'
6776 5' -48.4 NC_001875.2 + 92634 0.67 0.997353
Target:  5'- cCGACGACGUG--GCGGUugUa-GCGGc -3'
miRNA:   3'- -GCUGUUGUACcaCGUCAugAaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 37996 0.67 0.996855
Target:  5'- cCGACAACcguUGGUGCAuUACgg-GCa- -3'
miRNA:   3'- -GCUGUUGu--ACCACGUcAUGaaaCGcc -5'
6776 5' -48.4 NC_001875.2 + 72578 0.67 0.996855
Target:  5'- gGGCGcuGCG-GGUGCGG-GCgcUGCGGg -3'
miRNA:   3'- gCUGU--UGUaCCACGUCaUGaaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 131502 0.67 0.995625
Target:  5'- uCGACAgucugcggcGCGcGGUGCAGcgGCUggaaGCGGc -3'
miRNA:   3'- -GCUGU---------UGUaCCACGUCa-UGAaa--CGCC- -5'
6776 5' -48.4 NC_001875.2 + 89124 0.67 0.995625
Target:  5'- gCGACGACcgGGUGC---GCcUUGCGu -3'
miRNA:   3'- -GCUGUUGuaCCACGucaUGaAACGCc -5'
6776 5' -48.4 NC_001875.2 + 49355 0.67 0.995625
Target:  5'- gCGGCGGgcCGUGGUGCAacaUGCg--GCGGc -3'
miRNA:   3'- -GCUGUU--GUACCACGUc--AUGaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 111772 0.68 0.994029
Target:  5'- cCGACGAC-UGGUGUcgcuGGUGacg-GCGGu -3'
miRNA:   3'- -GCUGUUGuACCACG----UCAUgaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 102994 0.68 0.994029
Target:  5'- gGGC-ACGUGGUGgcgugcggcaAGUGCgcUGCGGg -3'
miRNA:   3'- gCUGuUGUACCACg---------UCAUGaaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 71191 0.68 0.993071
Target:  5'- aCGACGACAcaaaaUGGcacaagUGCGuGUACUaUGUGGa -3'
miRNA:   3'- -GCUGUUGU-----ACC------ACGU-CAUGAaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 125978 0.69 0.990788
Target:  5'- gCGAgGGCAaacgcgugcUGGUGCAcUGCUacGCGGg -3'
miRNA:   3'- -GCUgUUGU---------ACCACGUcAUGAaaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.