miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 3' -60.9 NC_001875.2 + 126786 0.66 0.677062
Target:  5'- uGCgGCugUGCaaGCUG-CGGCGgCUUUGCa -3'
miRNA:   3'- -CG-CGugACG--CGGCuGCCGC-GGAACGa -5'
6777 3' -60.9 NC_001875.2 + 54006 0.66 0.677062
Target:  5'- cGCGCACgGCcUUGGCGGCGCgc-GCg -3'
miRNA:   3'- -CGCGUGaCGcGGCUGCCGCGgaaCGa -5'
6777 3' -60.9 NC_001875.2 + 9803 0.66 0.677062
Target:  5'- uUGCACgGCGCCauCGGCGgCU-GCUa -3'
miRNA:   3'- cGCGUGaCGCGGcuGCCGCgGAaCGA- -5'
6777 3' -60.9 NC_001875.2 + 5908 0.66 0.677062
Target:  5'- uCGUACaGCGCCGGCauGGCGUUggGUa -3'
miRNA:   3'- cGCGUGaCGCGGCUG--CCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 84168 0.66 0.677062
Target:  5'- aCGCGCggcGCGCCG-CGGcCGCgUccgUGCg -3'
miRNA:   3'- cGCGUGa--CGCGGCuGCC-GCGgA---ACGa -5'
6777 3' -60.9 NC_001875.2 + 7101 0.66 0.677062
Target:  5'- cGUGCGCggcucggacgGCggcgaaacgGCCGACGcGUGCCUguUGCUu -3'
miRNA:   3'- -CGCGUGa---------CG---------CGGCUGC-CGCGGA--ACGA- -5'
6777 3' -60.9 NC_001875.2 + 72558 0.66 0.677062
Target:  5'- gGCGCuGCggGCGCgGGCgcgGGCGCUgcgggUGCg -3'
miRNA:   3'- -CGCG-UGa-CGCGgCUG---CCGCGGa----ACGa -5'
6777 3' -60.9 NC_001875.2 + 93574 0.66 0.677062
Target:  5'- cGCGCGCUGCGa----GGCGCuCUUuaGCUc -3'
miRNA:   3'- -CGCGUGACGCggcugCCGCG-GAA--CGA- -5'
6777 3' -60.9 NC_001875.2 + 119676 0.66 0.676065
Target:  5'- gGCGCACaGCggcuucaGCCGAaaGCGCUggUUGCg -3'
miRNA:   3'- -CGCGUGaCG-------CGGCUgcCGCGG--AACGa -5'
6777 3' -60.9 NC_001875.2 + 5323 0.66 0.667082
Target:  5'- uGCGCGCUaccugcuCGCCGaguGCGGgGCggUGCUg -3'
miRNA:   3'- -CGCGUGAc------GCGGC---UGCCgCGgaACGA- -5'
6777 3' -60.9 NC_001875.2 + 19955 0.66 0.667082
Target:  5'- gGCGCGacgGU-CCGGcCGGCGCCUcgccguUGCUg -3'
miRNA:   3'- -CGCGUga-CGcGGCU-GCCGCGGA------ACGA- -5'
6777 3' -60.9 NC_001875.2 + 125997 0.66 0.664083
Target:  5'- gGUGCACUGCuacGCgggcgcguccagauCGGCGGCGCUg-GCa -3'
miRNA:   3'- -CGCGUGACG---CG--------------GCUGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 94799 0.66 0.657075
Target:  5'- cGCGCGCgugcaGCGCCGugcACGGC-CauaaaUUGCa -3'
miRNA:   3'- -CGCGUGa----CGCGGC---UGCCGcGg----AACGa -5'
6777 3' -60.9 NC_001875.2 + 45228 0.66 0.657075
Target:  5'- cGCGCGCgaacagGCGgCG-CGuCGCCUUGUc -3'
miRNA:   3'- -CGCGUGa-----CGCgGCuGCcGCGGAACGa -5'
6777 3' -60.9 NC_001875.2 + 56815 0.66 0.657075
Target:  5'- cGCGUACUcGUucacgGCCGACGGCuGCg-UGCc -3'
miRNA:   3'- -CGCGUGA-CG-----CGGCUGCCG-CGgaACGa -5'
6777 3' -60.9 NC_001875.2 + 30203 0.66 0.657075
Target:  5'- cGUGUGCUacGCGUCaGCGGCGaCCcUGCUu -3'
miRNA:   3'- -CGCGUGA--CGCGGcUGCCGC-GGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 34152 0.66 0.657075
Target:  5'- uCGC-CUGCGCgaaUGGUGGCGCUUUGUUc -3'
miRNA:   3'- cGCGuGACGCG---GCUGCCGCGGAACGA- -5'
6777 3' -60.9 NC_001875.2 + 127375 0.66 0.657075
Target:  5'- -aGCA-UGCGCgGACGGCGCUcagaGCc -3'
miRNA:   3'- cgCGUgACGCGgCUGCCGCGGaa--CGa -5'
6777 3' -60.9 NC_001875.2 + 110164 0.66 0.647049
Target:  5'- uCGCGCU-CGUCgGGCGGCGUCgcacUGCg -3'
miRNA:   3'- cGCGUGAcGCGG-CUGCCGCGGa---ACGa -5'
6777 3' -60.9 NC_001875.2 + 41839 0.66 0.647049
Target:  5'- cGCGUccaguuGCcGCGCCG-CGGCGgCgaGCUg -3'
miRNA:   3'- -CGCG------UGaCGCGGCuGCCGCgGaaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.