miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 3' -58.5 NC_001875.2 + 1031 0.66 0.757359
Target:  5'- --cGUGGCGGGgcccgaGGCGCacagCGUUGGGCg -3'
miRNA:   3'- cauCGCCGUUCa-----CCGCGg---GCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 72923 0.66 0.757359
Target:  5'- --cGCGGCucuUGGCGUCCGC--GGCu -3'
miRNA:   3'- cauCGCCGuucACCGCGGGCGauCUG- -5'
6778 3' -58.5 NC_001875.2 + 48022 0.66 0.757359
Target:  5'- gGUGGCGGCccacGUGGC-CgCCGCccacAGGCa -3'
miRNA:   3'- -CAUCGCCGuu--CACCGcG-GGCGa---UCUG- -5'
6778 3' -58.5 NC_001875.2 + 95560 0.66 0.757359
Target:  5'- --uGCGGCGcauUGGCGCuCCGUUgugcAGGCg -3'
miRNA:   3'- cauCGCCGUuc-ACCGCG-GGCGA----UCUG- -5'
6778 3' -58.5 NC_001875.2 + 32786 0.66 0.757359
Target:  5'- --cGCGGCGuGGgcgGGCGCCgCGCc-GGCa -3'
miRNA:   3'- cauCGCCGU-UCa--CCGCGG-GCGauCUG- -5'
6778 3' -58.5 NC_001875.2 + 73683 0.66 0.747672
Target:  5'- -cGGCGGCugcuGcGGCGgCUGCUGcGGCg -3'
miRNA:   3'- caUCGCCGuu--CaCCGCgGGCGAU-CUG- -5'
6778 3' -58.5 NC_001875.2 + 73632 0.66 0.747672
Target:  5'- -cGGCGGCu-GcGGCGgCUGCUGcGGCg -3'
miRNA:   3'- caUCGCCGuuCaCCGCgGGCGAU-CUG- -5'
6778 3' -58.5 NC_001875.2 + 75272 0.66 0.747672
Target:  5'- -cGGCGGCGucGGcgaUGGCGUCgGCgauGGCg -3'
miRNA:   3'- caUCGCCGU--UC---ACCGCGGgCGau-CUG- -5'
6778 3' -58.5 NC_001875.2 + 48391 0.66 0.737883
Target:  5'- --cGCGGCGAcaGGUGCCgGCUcgGGAg -3'
miRNA:   3'- cauCGCCGUUcaCCGCGGgCGA--UCUg -5'
6778 3' -58.5 NC_001875.2 + 10464 0.66 0.728001
Target:  5'- -cGGCGGCGcgcucAGUgaauGGCGCuuGCUGaACg -3'
miRNA:   3'- caUCGCCGU-----UCA----CCGCGggCGAUcUG- -5'
6778 3' -58.5 NC_001875.2 + 6988 0.66 0.728001
Target:  5'- -cAGCGGgcaucuuugcuuCGAcGUGGCGCgCCaguuGCUGGACg -3'
miRNA:   3'- caUCGCC------------GUU-CACCGCG-GG----CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 87827 0.66 0.718034
Target:  5'- --uGCGGUAcagcacgcuGGgcacGGCGCCCGUcGGGCu -3'
miRNA:   3'- cauCGCCGU---------UCa---CCGCGGGCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 121885 0.67 0.707993
Target:  5'- cGUGGUGGCuauAAGccGGCGUgggcagcaCCGCUAGAa -3'
miRNA:   3'- -CAUCGCCG---UUCa-CCGCG--------GGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 90970 0.67 0.707993
Target:  5'- --cGCGuGCAccaGGaUGGCGCCCGCgguGCg -3'
miRNA:   3'- cauCGC-CGU---UC-ACCGCGGGCGaucUG- -5'
6778 3' -58.5 NC_001875.2 + 55314 0.67 0.707993
Target:  5'- --cGCGGC-AGUGGCGCgCGaCggugauGACg -3'
miRNA:   3'- cauCGCCGuUCACCGCGgGC-Gau----CUG- -5'
6778 3' -58.5 NC_001875.2 + 79757 0.67 0.697886
Target:  5'- cUGGUGGCGAGcaUGuGCGCaaacaCCGCUucGGGCa -3'
miRNA:   3'- cAUCGCCGUUC--AC-CGCG-----GGCGA--UCUG- -5'
6778 3' -58.5 NC_001875.2 + 50034 0.67 0.687724
Target:  5'- -gGGCGGCGAGgcGGCcgGCCCGUcgcugucugaAGACa -3'
miRNA:   3'- caUCGCCGUUCa-CCG--CGGGCGa---------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 113343 0.67 0.686705
Target:  5'- --uGCGGCGGGUcgGGCGCggcugcgUCGCUGcGGCg -3'
miRNA:   3'- cauCGCCGUUCA--CCGCG-------GGCGAU-CUG- -5'
6778 3' -58.5 NC_001875.2 + 39671 0.67 0.667268
Target:  5'- -cGGCGGCGcgcGGcGGCGagCUGCUAGAg -3'
miRNA:   3'- caUCGCCGU---UCaCCGCg-GGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 91680 0.67 0.656992
Target:  5'- aUGGUGGC----GGCGCCCGUuuuuuUGGGCg -3'
miRNA:   3'- cAUCGCCGuucaCCGCGGGCG-----AUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.