miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 112054 0.66 0.993308
Target:  5'- ----uCACGUcGGCCGCGUCGucuUCCAGc -3'
miRNA:   3'- uuuucGUGUAaUUGGCGCGGU---AGGUC- -5'
6779 3' -49.7 NC_001875.2 + 42563 0.66 0.993308
Target:  5'- ---cGCGCcc-AGCCGCGCCAggUCGGc -3'
miRNA:   3'- uuuuCGUGuaaUUGGCGCGGUa-GGUC- -5'
6779 3' -49.7 NC_001875.2 + 61072 0.66 0.993308
Target:  5'- ---uGCACAaaAACUGCGCCGcCCGc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 120688 0.66 0.993308
Target:  5'- ---uGCGcCAUcGACCG-GCCGUCCAu -3'
miRNA:   3'- uuuuCGU-GUAaUUGGCgCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 23281 0.66 0.993308
Target:  5'- --cAGCACc---GCCGCGCCguaaauGUCCAc -3'
miRNA:   3'- uuuUCGUGuaauUGGCGCGG------UAGGUc -5'
6779 3' -49.7 NC_001875.2 + 99416 0.66 0.993308
Target:  5'- --cAGCugAUUGGCCagagacuuuGCGCCGUCg-- -3'
miRNA:   3'- uuuUCGugUAAUUGG---------CGCGGUAGguc -5'
6779 3' -49.7 NC_001875.2 + 102026 0.66 0.993308
Target:  5'- --cAGCGugcCGUUGACCcauGCGCCG-CCAGc -3'
miRNA:   3'- uuuUCGU---GUAAUUGG---CGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 12649 0.66 0.993308
Target:  5'- -uGAGCAUaaacaugcuguuGUUGACgCGCGCCGcguuggCCGGg -3'
miRNA:   3'- uuUUCGUG------------UAAUUG-GCGCGGUa-----GGUC- -5'
6779 3' -49.7 NC_001875.2 + 18280 0.66 0.992243
Target:  5'- ---cGCGCcgUgcgcGACCGCGCCGUUg-- -3'
miRNA:   3'- uuuuCGUGuaA----UUGGCGCGGUAGguc -5'
6779 3' -49.7 NC_001875.2 + 120981 0.66 0.992243
Target:  5'- ---cGaCGCGgccACCGCGUCGUCCAc -3'
miRNA:   3'- uuuuC-GUGUaauUGGCGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 118996 0.66 0.992243
Target:  5'- --cGGCuGCGUgcUAGCCgGCGCCG-CCGGg -3'
miRNA:   3'- uuuUCG-UGUA--AUUGG-CGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 93402 0.66 0.992243
Target:  5'- -cGGGCGCGUUAAUCa-GCCGUUUAGa -3'
miRNA:   3'- uuUUCGUGUAAUUGGcgCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 22588 0.66 0.992243
Target:  5'- --cGGCGCGUUGGCCG-GCCggCUg- -3'
miRNA:   3'- uuuUCGUGUAAUUGGCgCGGuaGGuc -5'
6779 3' -49.7 NC_001875.2 + 130464 0.66 0.991049
Target:  5'- ---cGCACcgcUAGCaCGCGCCGUUCGa -3'
miRNA:   3'- uuuuCGUGua-AUUG-GCGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 119531 0.66 0.991049
Target:  5'- -cGGGCGCGUUGACCacgcacacgGCGgCGUgCCGGc -3'
miRNA:   3'- uuUUCGUGUAAUUGG---------CGCgGUA-GGUC- -5'
6779 3' -49.7 NC_001875.2 + 43646 0.66 0.991049
Target:  5'- ----aCACGUUGugCGCGCCGUUg-- -3'
miRNA:   3'- uuuucGUGUAAUugGCGCGGUAGguc -5'
6779 3' -49.7 NC_001875.2 + 81912 0.66 0.991049
Target:  5'- --cAGCugAUUAGCgCGCGCgGcUCCGa -3'
miRNA:   3'- uuuUCGugUAAUUG-GCGCGgU-AGGUc -5'
6779 3' -49.7 NC_001875.2 + 83619 0.66 0.989715
Target:  5'- --cGGCGCGUU--CCGCGCCAgcaAGg -3'
miRNA:   3'- uuuUCGUGUAAuuGGCGCGGUaggUC- -5'
6779 3' -49.7 NC_001875.2 + 62582 0.66 0.989715
Target:  5'- ---uGUGCAUUAAccggcCCGUGCCGUCgGGc -3'
miRNA:   3'- uuuuCGUGUAAUU-----GGCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 94733 0.66 0.989715
Target:  5'- --cGGCGCGgc-GCCGCGCCcgCaCAc -3'
miRNA:   3'- uuuUCGUGUaauUGGCGCGGuaG-GUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.