miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 131759 0.68 0.676789
Target:  5'- cGGCGgaucGGGCGGCGCGUCauugguGUC-GUUCGCc -3'
miRNA:   3'- -CUGU----UCCGCUGCGCGG------CGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 130926 0.72 0.496317
Target:  5'- cGGCAGuGGCGGCgguuuGCGCCGUgUGUUUGg -3'
miRNA:   3'- -CUGUU-CCGCUG-----CGCGGCGgACAAGCg -5'
6779 5' -57.7 NC_001875.2 + 130111 0.7 0.605552
Target:  5'- cGGCGGcGGCGGCGCGaCCGgUg--UCGCg -3'
miRNA:   3'- -CUGUU-CCGCUGCGC-GGCgGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 129163 0.66 0.809912
Target:  5'- -cCGAGGCGccgcaguugccccAgGCGCCGCCgg--CGCc -3'
miRNA:   3'- cuGUUCCGC-------------UgCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 128774 0.68 0.716875
Target:  5'- gGGCGAcccCGGCGCGCCGCUg---CGCg -3'
miRNA:   3'- -CUGUUcc-GCUGCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 127320 0.67 0.736523
Target:  5'- cGCAGccGGCGGUGCGCCGCUUuc-CGCa -3'
miRNA:   3'- cUGUU--CCGCUGCGCGGCGGAcaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 126893 0.66 0.836219
Target:  5'- aGAcCGAGGCGGCGCaaaguguuaguGCUGCCc---CGCa -3'
miRNA:   3'- -CU-GUUCCGCUGCG-----------CGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 125286 0.66 0.801976
Target:  5'- -uCGGGGUacaccuuguuGACGCGCCGCaaGUUgGUa -3'
miRNA:   3'- cuGUUCCG----------CUGCGCGGCGgaCAAgCG- -5'
6779 5' -57.7 NC_001875.2 + 125151 0.67 0.755811
Target:  5'- uACAAauGGCG-UGCGCCGUCg--UCGCc -3'
miRNA:   3'- cUGUU--CCGCuGCGCGGCGGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 120835 0.66 0.819435
Target:  5'- aGGCAcaccauGGGC-ACGCG-CGCCUGcagCGCu -3'
miRNA:   3'- -CUGU------UCCGcUGCGCgGCGGACaa-GCG- -5'
6779 5' -57.7 NC_001875.2 + 120767 0.67 0.765297
Target:  5'- -cCAGGGCG-CGCGCCacgccaaacuGCUgcaGUUUGCg -3'
miRNA:   3'- cuGUUCCGCuGCGCGG----------CGGa--CAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 120347 0.68 0.686886
Target:  5'- ----cGGCGACGUGUuaCGCCUGUgacUGCc -3'
miRNA:   3'- cuguuCCGCUGCGCG--GCGGACAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 119912 0.66 0.814266
Target:  5'- cACAGucGGCGcgccGCGCgcaaaacaccugcucGCCGCC-GUUCGCg -3'
miRNA:   3'- cUGUU--CCGC----UGCG---------------CGGCGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 119883 0.67 0.774665
Target:  5'- uGCuucuGCaACGCGCCGCCgg-UCGCg -3'
miRNA:   3'- cUGuuc-CGcUGCGCGGCGGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 119548 0.68 0.706939
Target:  5'- cACAcGGCGGCGUGCCGgCUGcacacggUgGCc -3'
miRNA:   3'- cUGUuCCGCUGCGCGGCgGACa------AgCG- -5'
6779 5' -57.7 NC_001875.2 + 118307 0.68 0.716875
Target:  5'- cGACAGGGuCGAgGCgGCCGgCCg---CGCg -3'
miRNA:   3'- -CUGUUCC-GCUgCG-CGGC-GGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 118208 0.67 0.756764
Target:  5'- ----cGGCGGCGCGgcaaCCGCCUGccacauuggagacgaUCGCa -3'
miRNA:   3'- cuguuCCGCUGCGC----GGCGGACa--------------AGCG- -5'
6779 5' -57.7 NC_001875.2 + 117926 0.71 0.515626
Target:  5'- cGGCAAgcugcaggccGGCGuGCGCGCCGCCgcGUUUGg -3'
miRNA:   3'- -CUGUU----------CCGC-UGCGCGGCGGa-CAAGCg -5'
6779 5' -57.7 NC_001875.2 + 114933 0.66 0.801976
Target:  5'- cACGAGGCc-CGCGCCGUCg--UCGa -3'
miRNA:   3'- cUGUUCCGcuGCGCGGCGGacaAGCg -5'
6779 5' -57.7 NC_001875.2 + 113628 0.7 0.595393
Target:  5'- cGGCAAgagcGGCGACgGCGCCGCgUaaucaaagUCGCg -3'
miRNA:   3'- -CUGUU----CCGCUG-CGCGGCGgAca------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.