miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 131723 0.69 0.684247
Target:  5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3'
miRNA:   3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 129966 0.68 0.743085
Target:  5'- gCGGCGGCgGCggcGGc-GGCGgCGGCa -3'
miRNA:   3'- gGCUGCUGgUGaa-CCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128762 0.66 0.840802
Target:  5'- gCCGAgGACCcCUUcuugGGCcCCGGCa -3'
miRNA:   3'- -GGCUgCUGGuGAAccaaCCGcGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128648 0.68 0.789605
Target:  5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3'
miRNA:   3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 127044 0.66 0.840802
Target:  5'- gCUGGCGACag-------GGCGCCGGCu -3'
miRNA:   3'- -GGCUGCUGgugaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 125949 0.75 0.397271
Target:  5'- gCUGuACGACUACaUGGUUcGGCGCauCGGCg -3'
miRNA:   3'- -GGC-UGCUGGUGaACCAA-CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 125338 0.73 0.476932
Target:  5'- aCGGCGGCCAgCgu-GUUGGCG-CGGCa -3'
miRNA:   3'- gGCUGCUGGU-GaacCAACCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 124982 0.68 0.789605
Target:  5'- gCCGcGCGuCCGCUUuacgugcaaGUUGGCGUCGGg -3'
miRNA:   3'- -GGC-UGCuGGUGAAc--------CAACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 123343 0.72 0.514797
Target:  5'- gCGGCGcCCACacGGacGGCGCCcGGCg -3'
miRNA:   3'- gGCUGCuGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 122760 0.67 0.807309
Target:  5'- gCCGACucGCCACaggcgcaGUUGGCGgaaaCCGGCg -3'
miRNA:   3'- -GGCUGc-UGGUGaac----CAACCGC----GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119536 0.67 0.832687
Target:  5'- gCGuuGACCACgcacacGGcgGcGUGCCGGCu -3'
miRNA:   3'- gGCugCUGGUGaa----CCaaC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119054 0.69 0.70412
Target:  5'- uCCGGCGugCGCaUGuGcgcGGCGCCccGGCu -3'
miRNA:   3'- -GGCUGCugGUGaAC-Caa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 117363 0.72 0.514797
Target:  5'- gCCGGCuGGCCGucgGGgaGGCGCCGaGCu -3'
miRNA:   3'- -GGCUG-CUGGUgaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 115907 0.67 0.832687
Target:  5'- gCUGGCGccccGCCAgCUgGGUcauguugccGGUGCCGGCa -3'
miRNA:   3'- -GGCUGC----UGGU-GAaCCAa--------CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 115528 0.71 0.612798
Target:  5'- aUGGCGACCAaauggGGUUGGCgGCCuauuccacagaugGGCu -3'
miRNA:   3'- gGCUGCUGGUgaa--CCAACCG-CGG-------------CCG- -5'
6780 3' -57.2 NC_001875.2 + 114741 0.66 0.840802
Target:  5'- --uGCGGCCGCcag--UGGCGCgCGGCu -3'
miRNA:   3'- ggcUGCUGGUGaaccaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 114027 0.66 0.878485
Target:  5'- aUGGCGGCCGCgcGGUccagaUGGUagcacGCgGGCu -3'
miRNA:   3'- gGCUGCUGGUGaaCCA-----ACCG-----CGgCCG- -5'
6780 3' -57.2 NC_001875.2 + 113667 0.67 0.832687
Target:  5'- gCCGGCaccGCCACagUGGc-GGCGUCGcGCg -3'
miRNA:   3'- -GGCUGc--UGGUGa-ACCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 112710 0.68 0.743085
Target:  5'- gCUGACGgcGCCGCcgUGGUaGGCGCguCGcGCg -3'
miRNA:   3'- -GGCUGC--UGGUGa-ACCAaCCGCG--GC-CG- -5'
6780 3' -57.2 NC_001875.2 + 111848 0.67 0.80206
Target:  5'- gCCGGCcaggugucuGGCCACgcacgucagcaacGGcgaGGCGCCGGCc -3'
miRNA:   3'- -GGCUG---------CUGGUGaa-----------CCaa-CCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.