miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 81963 1.13 0.001147
Target:  5'- uCCGACGACCACUUGGUUGGCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGUGAACCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 131723 0.69 0.684247
Target:  5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3'
miRNA:   3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 11077 0.69 0.694208
Target:  5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3'
miRNA:   3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 28600 0.66 0.878485
Target:  5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3'
miRNA:   3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 125338 0.73 0.476932
Target:  5'- aCGGCGGCCAgCgu-GUUGGCG-CGGCa -3'
miRNA:   3'- gGCUGCUGGU-GaacCAACCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 101150 0.73 0.50521
Target:  5'- aCGAuuuCGACCACgUGGccgugcgcgUGGCGCUGGUc -3'
miRNA:   3'- gGCU---GCUGGUGaACCa--------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 123343 0.72 0.514797
Target:  5'- gCGGCGcCCACacGGacGGCGCCcGGCg -3'
miRNA:   3'- gGCUGCuGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 111147 0.72 0.524457
Target:  5'- uUGGCGGCgGCUUGGUgucacGGCGCUGcuuaGCg -3'
miRNA:   3'- gGCUGCUGgUGAACCAa----CCGCGGC----CG- -5'
6780 3' -57.2 NC_001875.2 + 2648 0.7 0.623889
Target:  5'- aCGgacACGuCUACUUGc--GGCGCCGGCg -3'
miRNA:   3'- gGC---UGCuGGUGAACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 11614 0.69 0.684247
Target:  5'- gCGGCGugGCCACgaaugGGUUGGCGC--GCa -3'
miRNA:   3'- gGCUGC--UGGUGaa---CCAACCGCGgcCG- -5'
6780 3' -57.2 NC_001875.2 + 19119 0.7 0.633978
Target:  5'- uUCGACGagGCCACgcucgUGGgccaaGCGCUGGCc -3'
miRNA:   3'- -GGCUGC--UGGUGa----ACCaac--CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 101218 0.71 0.613805
Target:  5'- gUCGACGGCU--UUGGUUGcGCGCaguuuaaaGGCg -3'
miRNA:   3'- -GGCUGCUGGugAACCAAC-CGCGg-------CCG- -5'
6780 3' -57.2 NC_001875.2 + 61590 0.77 0.291675
Target:  5'- gCGGCGACgGCUcg---GGCGCCGGCg -3'
miRNA:   3'- gGCUGCUGgUGAaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40191 0.7 0.648099
Target:  5'- aCUGGaacCCGCU-GGUgcccaucacggaaauUGGCGCCGGCg -3'
miRNA:   3'- -GGCUgcuGGUGAaCCA---------------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 125949 0.75 0.397271
Target:  5'- gCUGuACGACUACaUGGUUcGGCGCauCGGCg -3'
miRNA:   3'- -GGC-UGCUGGUGaACCAA-CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 1507 0.71 0.602729
Target:  5'- gCGACGACC-CUgccuuuugGGUgcgGGCGCucucgaaCGGCg -3'
miRNA:   3'- gGCUGCUGGuGAa-------CCAa--CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 60176 0.7 0.654145
Target:  5'- gUCGGCGGCacaaauacagCGCUUcGUUGaauuGCGCCGGCg -3'
miRNA:   3'- -GGCUGCUG----------GUGAAcCAAC----CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 88333 0.69 0.684247
Target:  5'- aCCGACGACC---UGGagGGCGUCaaGGUg -3'
miRNA:   3'- -GGCUGCUGGugaACCaaCCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 9045 0.74 0.422883
Target:  5'- gCCGcCGGCCGCgccGGUUuccGCGCCGGUu -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCAAc--CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 3182 0.72 0.510953
Target:  5'- gCCGGCGGCCGCgcaccagagacaGGUU-GCGgCGGCg -3'
miRNA:   3'- -GGCUGCUGGUGaa----------CCAAcCGCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.