miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 87668 0.66 0.949017
Target:  5'- aCGGUCaGCGCGUgcgaaaucGAGGAG-AGCGAc- -3'
miRNA:   3'- -GCCGGcCGCGCG--------UUUUUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 31992 0.66 0.949017
Target:  5'- aCGGCCGGUuuGUGAGcGGcGGCGAc- -3'
miRNA:   3'- -GCCGGCCGcgCGUUUuUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 2945 0.66 0.949017
Target:  5'- gCGcGCUGGCGCGCuugcucGGcAGCGGu- -3'
miRNA:   3'- -GC-CGGCCGCGCGuuuu--UCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 50365 0.66 0.949017
Target:  5'- gGGCCGcGCGCGCcacu-GAccGCGGAc -3'
miRNA:   3'- gCCGGC-CGCGCGuuuuuCUu-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 95409 0.66 0.944512
Target:  5'- gCGcGCCGGCGuCGCAAAgguAAGGccucGCGGc- -3'
miRNA:   3'- -GC-CGGCCGC-GCGUUU---UUCUu---CGCUua -5'
6780 5' -53.6 NC_001875.2 + 113614 0.66 0.944512
Target:  5'- gCGGCgGGcCGCGgCGGcAAGAgcGGCGAc- -3'
miRNA:   3'- -GCCGgCC-GCGC-GUUuUUCU--UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 82309 0.66 0.944512
Target:  5'- uGGCgCGGCGCGCAAuucuacuacGAGcuGCuGAAg -3'
miRNA:   3'- gCCG-GCCGCGCGUUu--------UUCuuCG-CUUa -5'
6780 5' -53.6 NC_001875.2 + 63131 0.66 0.944512
Target:  5'- gCGGCCgGGCGCGCGGcc-GgcGCa--- -3'
miRNA:   3'- -GCCGG-CCGCGCGUUuuuCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 40829 0.66 0.944512
Target:  5'- cCGGCCGGC-CGUggGcAAGAcGGCGc-- -3'
miRNA:   3'- -GCCGGCCGcGCGuuU-UUCU-UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 98396 0.66 0.943111
Target:  5'- uGGCCGGcCGCGCuGAacgcgcucacgcacGAcauugcGGAAGCGGGa -3'
miRNA:   3'- gCCGGCC-GCGCG-UU--------------UU------UCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 112847 0.66 0.939753
Target:  5'- gCGGCCuGCGCGCAcu--GccGUGGAUa -3'
miRNA:   3'- -GCCGGcCGCGCGUuuuuCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 780 0.66 0.939753
Target:  5'- aCGG-CGGCGCGCGGAAcGuucauGGCGu-- -3'
miRNA:   3'- -GCCgGCCGCGCGUUUUuCu----UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 39931 0.66 0.938771
Target:  5'- gCGGCCuGCGCGCAAuuugcgcGCGGu- -3'
miRNA:   3'- -GCCGGcCGCGCGUUuuucuu-CGCUua -5'
6780 5' -53.6 NC_001875.2 + 127891 0.66 0.929469
Target:  5'- aCGGUUugugGGCGCGCAuuuGAAcAAGCGGGc -3'
miRNA:   3'- -GCCGG----CCGCGCGUu--UUUcUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 59011 0.66 0.929469
Target:  5'- gCGaGCUGGCcacugaaaacgaGCGCcu-GAGggGCGAAa -3'
miRNA:   3'- -GC-CGGCCG------------CGCGuuuUUCuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 50486 0.66 0.929469
Target:  5'- gCGGCCGGCGCGUgcgc----GCGGc- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 20009 0.66 0.928384
Target:  5'- uGGCCGGCucGCGCAGccgucacGCGGAg -3'
miRNA:   3'- gCCGGCCG--CGCGUUuuucuu-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 5539 0.66 0.923941
Target:  5'- uCGGaggaGGaCGCGCGGcaauucGAGGAGCGAAUa -3'
miRNA:   3'- -GCCgg--CC-GCGCGUUu-----UUCUUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 84410 0.66 0.922233
Target:  5'- uCGGCggCGGCGCGUAuaggugccaucggcGGAucGGGAGCGGc- -3'
miRNA:   3'- -GCCG--GCCGCGCGU--------------UUU--UCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 110522 0.67 0.918156
Target:  5'- aGGCgGGCcccGCGCAAuuuGAGGUGGu- -3'
miRNA:   3'- gCCGgCCG---CGCGUUuuuCUUCGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.