miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 3' -58.1 NC_001875.2 + 42603 0.66 0.819737
Target:  5'- uCGGCGCUgGGCACCGCCAacacGCaaguguacuccUUGUCUg -3'
miRNA:   3'- uGCUGCGG-CUGUGGUGGU----CG-----------AGCAGA- -5'
6781 3' -58.1 NC_001875.2 + 82988 0.66 0.819737
Target:  5'- cGCGGCGCCGcucguCGCCGgCgGGCUUGa-- -3'
miRNA:   3'- -UGCUGCGGCu----GUGGU-GgUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 76494 0.66 0.819737
Target:  5'- gACGACGaggCGGCGCCcCCgaAGCggcgCGUCa -3'
miRNA:   3'- -UGCUGCg--GCUGUGGuGG--UCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 19124 0.66 0.819737
Target:  5'- cGCGACGCgccuaccacggCGGCGCCGUCAGCgacaCGUUUu -3'
miRNA:   3'- -UGCUGCG-----------GCUGUGGUGGUCGa---GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 93338 0.66 0.81113
Target:  5'- uGCGACaCCaGCACCACCuugUCGUCg -3'
miRNA:   3'- -UGCUGcGGcUGUGGUGGucgAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 105304 0.66 0.81113
Target:  5'- aGC-ACGCCGACucaAgCGCCAGCUCa--- -3'
miRNA:   3'- -UGcUGCGGCUG---UgGUGGUCGAGcaga -5'
6781 3' -58.1 NC_001875.2 + 23271 0.66 0.81113
Target:  5'- aGCGcaGCGCCaGCACCGCCGcGC-CGUa- -3'
miRNA:   3'- -UGC--UGCGGcUGUGGUGGU-CGaGCAga -5'
6781 3' -58.1 NC_001875.2 + 99387 0.66 0.81113
Target:  5'- aGCGcCGCacCGGCGgCGCCAGCggGUCg -3'
miRNA:   3'- -UGCuGCG--GCUGUgGUGGUCGagCAGa -5'
6781 3' -58.1 NC_001875.2 + 73618 0.66 0.81113
Target:  5'- uGCGGCGgCGGCugCGgCGGCUgCGgcggCUg -3'
miRNA:   3'- -UGCUGCgGCUGugGUgGUCGA-GCa---GA- -5'
6781 3' -58.1 NC_001875.2 + 11205 0.66 0.81113
Target:  5'- cACGACGCCG-CGCCGgacgagaaGGC-CGUCa -3'
miRNA:   3'- -UGCUGCGGCuGUGGUgg------UCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 32967 0.66 0.81113
Target:  5'- aACGGCGcCCGcgcacauuaGCGCCACCAaCUCG-Cg -3'
miRNA:   3'- -UGCUGC-GGC---------UGUGGUGGUcGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 80263 0.66 0.81113
Target:  5'- aACGugGCC-ACGCCGCgcgucgugaaCGGCUCG-Ca -3'
miRNA:   3'- -UGCugCGGcUGUGGUG----------GUCGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 25184 0.66 0.81113
Target:  5'- -gGACGCCGGCAUugacauguaCACC-GC-CGUCg -3'
miRNA:   3'- ugCUGCGGCUGUG---------GUGGuCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 5748 0.66 0.81113
Target:  5'- gGCGACGCgGcgcuugcuuuGCACCGCguuCAGCgCGUCc -3'
miRNA:   3'- -UGCUGCGgC----------UGUGGUG---GUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 60282 0.66 0.81113
Target:  5'- uGCGGCGCacuuguuggCGACACUGCaGGCgacgCGUCg -3'
miRNA:   3'- -UGCUGCG---------GCUGUGGUGgUCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 130061 0.66 0.802363
Target:  5'- gGCGGCGgCGGCGgCGgCAuGCUCGUg- -3'
miRNA:   3'- -UGCUGCgGCUGUgGUgGU-CGAGCAga -5'
6781 3' -58.1 NC_001875.2 + 88287 0.66 0.802363
Target:  5'- -aGACGCCGcC-CCGCCAcGUUCGcCa -3'
miRNA:   3'- ugCUGCGGCuGuGGUGGU-CGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 61468 0.66 0.802363
Target:  5'- aGCGGCGCgCaAUugCugCAGCgCGUCg -3'
miRNA:   3'- -UGCUGCG-GcUGugGugGUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 2663 0.66 0.802363
Target:  5'- uGCGGCGCCGGCGgCGCCuggGGCaacugCGg-- -3'
miRNA:   3'- -UGCUGCGGCUGUgGUGG---UCGa----GCaga -5'
6781 3' -58.1 NC_001875.2 + 93548 0.66 0.802363
Target:  5'- uCGGCGCU--CGCCACC-GCgUCGUCg -3'
miRNA:   3'- uGCUGCGGcuGUGGUGGuCG-AGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.