miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 5' -50.5 NC_001875.2 + 17938 0.66 0.993672
Target:  5'- cCGGCuauGACgagUUuuUGuGCCCGGCAGCc -3'
miRNA:   3'- -GCCG---UUGaa-AAugAC-CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 59629 0.66 0.993672
Target:  5'- uGGCgGACgccgcgucGCUGGCUCGugGGCu -3'
miRNA:   3'- gCCG-UUGaaaa----UGACCGGGCugUUGc -5'
6785 5' -50.5 NC_001875.2 + 14055 0.66 0.993672
Target:  5'- uCGuCAACUUUUGCgucGCCaaCGGCGACGg -3'
miRNA:   3'- -GCcGUUGAAAAUGac-CGG--GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 125757 0.66 0.993672
Target:  5'- gGGCGGCUaUUAC-GGC--GACAACGa -3'
miRNA:   3'- gCCGUUGAaAAUGaCCGggCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 122525 0.66 0.993672
Target:  5'- gGGCAGCUUcgccgAUUGcGUCCGGCG-CGc -3'
miRNA:   3'- gCCGUUGAAaa---UGAC-CGGGCUGUuGC- -5'
6785 5' -50.5 NC_001875.2 + 118042 0.66 0.993387
Target:  5'- aCGGCAACgcc-GCgccacccgcacgauuGUCCGACAACGg -3'
miRNA:   3'- -GCCGUUGaaaaUGac-------------CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 112428 0.66 0.991575
Target:  5'- gCGGUAGuCguugUUUGC--GCCCGGCAACa -3'
miRNA:   3'- -GCCGUU-Ga---AAAUGacCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 52037 0.66 0.991575
Target:  5'- gGGC-ACguucaaGC-GGCCCGACGACc -3'
miRNA:   3'- gCCGuUGaaaa--UGaCCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 2370 0.66 0.991575
Target:  5'- gCGGCAugUUg----GaGUCCGACAGCu -3'
miRNA:   3'- -GCCGUugAAaaugaC-CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 74576 0.66 0.991575
Target:  5'- uCGGaCGACUUUgaggUGCUGGaCCCcuccacgcuGACGACc -3'
miRNA:   3'- -GCC-GUUGAAA----AUGACC-GGG---------CUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 94402 0.66 0.991575
Target:  5'- gCGGCGGCUau--UUGGCcgCCGACuGCGc -3'
miRNA:   3'- -GCCGUUGAaaauGACCG--GGCUGuUGC- -5'
6785 5' -50.5 NC_001875.2 + 37894 0.66 0.990338
Target:  5'- -aGCGGCU--UGCUGGCgCGGCAcugGCa -3'
miRNA:   3'- gcCGUUGAaaAUGACCGgGCUGU---UGc -5'
6785 5' -50.5 NC_001875.2 + 33667 0.66 0.990338
Target:  5'- uCGGCGGCguggUAaaacaaacGGCCCGACGuGCGc -3'
miRNA:   3'- -GCCGUUGaaa-AUga------CCGGGCUGU-UGC- -5'
6785 5' -50.5 NC_001875.2 + 125466 0.66 0.990338
Target:  5'- gGGCcGC----GCgGuGCCCGACGACGa -3'
miRNA:   3'- gCCGuUGaaaaUGaC-CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 115872 0.66 0.988963
Target:  5'- gCGGCcGCU----CUGGCCgGGCAggauGCGg -3'
miRNA:   3'- -GCCGuUGAaaauGACCGGgCUGU----UGC- -5'
6785 5' -50.5 NC_001875.2 + 110018 0.66 0.988963
Target:  5'- gCGcGCAGCUcg-ACcagUGGCgCGACAACa -3'
miRNA:   3'- -GC-CGUUGAaaaUG---ACCGgGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 12344 0.66 0.988963
Target:  5'- aGGuCGugUUUgacgGCUucgccaaGCCCGACGACGa -3'
miRNA:   3'- gCC-GUugAAAa---UGAc------CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 82073 0.66 0.988963
Target:  5'- cCGGgGGCUUUgcggccuacaUACUGGgCCGcacCAGCGa -3'
miRNA:   3'- -GCCgUUGAAA----------AUGACCgGGCu--GUUGC- -5'
6785 5' -50.5 NC_001875.2 + 49908 0.66 0.988963
Target:  5'- cCGGCGAgUUguucUUGaGCCCGACAAa- -3'
miRNA:   3'- -GCCGUUgAAaau-GAC-CGGGCUGUUgc -5'
6785 5' -50.5 NC_001875.2 + 79456 0.67 0.98744
Target:  5'- aGGUAGCUggcgUUugaGCUGGCCacgaGGCAAa- -3'
miRNA:   3'- gCCGUUGAa---AA---UGACCGGg---CUGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.