miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 120678 0.66 0.923958
Target:  5'- ----cGCGCUgcUGuGCGCCAUCGACc- -3'
miRNA:   3'- cgguaUGCGA--ACcCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 66004 0.66 0.923958
Target:  5'- uGCCcuauuauCGgUUGGGCGCCcacgagcgCGugGAg -3'
miRNA:   3'- -CGGuau----GCgAACCCGCGGua------GCugCU- -5'
6786 5' -55.3 NC_001875.2 + 9030 0.66 0.923958
Target:  5'- cGCCuUGCGUUUGGaGCcGCCGgccgCGcCGGu -3'
miRNA:   3'- -CGGuAUGCGAACC-CG-CGGUa---GCuGCU- -5'
6786 5' -55.3 NC_001875.2 + 3141 0.66 0.923958
Target:  5'- aGCCcgcUGCGCggacGcGGCGUCGggCGGCGAg -3'
miRNA:   3'- -CGGu--AUGCGaa--C-CCGCGGUa-GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 122300 0.66 0.918329
Target:  5'- aGCCGaacuUAUGCUaaagguaaacgUGGGCGCCAcCG-CGu -3'
miRNA:   3'- -CGGU----AUGCGA-----------ACCCGCGGUaGCuGCu -5'
6786 5' -55.3 NC_001875.2 + 26289 0.66 0.912456
Target:  5'- cGUCAaacACGCccgUGGGCGUCAcgccaauuucgCGACGAg -3'
miRNA:   3'- -CGGUa--UGCGa--ACCCGCGGUa----------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 102558 0.66 0.912456
Target:  5'- cGCCAcacgaccGCGCcccgccGGCGCgGUCGGCGGc -3'
miRNA:   3'- -CGGUa------UGCGaac---CCGCGgUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 94673 0.66 0.912456
Target:  5'- gGCCAgcGCGCggcacGGGUGCUGgaaccCGGCGAu -3'
miRNA:   3'- -CGGUa-UGCGaa---CCCGCGGUa----GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 98492 0.66 0.912456
Target:  5'- uGCCgcGUGCGUgaUUGGcUGCCGggCGACGAc -3'
miRNA:   3'- -CGG--UAUGCG--AACCcGCGGUa-GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 89116 0.66 0.912456
Target:  5'- cGCCGcGCGCgacgaccgGGuGCGCCuugCGuACGAa -3'
miRNA:   3'- -CGGUaUGCGaa------CC-CGCGGua-GC-UGCU- -5'
6786 5' -55.3 NC_001875.2 + 24010 0.66 0.912456
Target:  5'- cGCaagGCGCaccGGGCGCgGgcUCGGCGGu -3'
miRNA:   3'- -CGguaUGCGaa-CCCGCGgU--AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 31604 0.66 0.912456
Target:  5'- cGCCGUGC-CgUGGGCGgaCCAcaugcgcguguUUGACGAg -3'
miRNA:   3'- -CGGUAUGcGaACCCGC--GGU-----------AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 82185 0.66 0.906342
Target:  5'- gGUCGUGCuCgaUGGGCGCCggCGGCc- -3'
miRNA:   3'- -CGGUAUGcGa-ACCCGCGGuaGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 105211 0.66 0.906342
Target:  5'- cGCCGUggcgcccucgucAUGCUUGGGCGgCCuGUCauGGCGc -3'
miRNA:   3'- -CGGUA------------UGCGAACCCGC-GG-UAG--CUGCu -5'
6786 5' -55.3 NC_001875.2 + 31700 0.66 0.906342
Target:  5'- cGCCGcuUGCGCgccgccGGCGCauuacuuUCGGCGAa -3'
miRNA:   3'- -CGGU--AUGCGaac---CCGCGgu-----AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 82951 0.66 0.906342
Target:  5'- gGUCGU-CGCggcGGGCGCguccUCGGCGAc -3'
miRNA:   3'- -CGGUAuGCGaa-CCCGCGgu--AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 9788 0.66 0.905718
Target:  5'- cGCUccgggguGUACuuGCac-GGCGCCAUCGGCGGc -3'
miRNA:   3'- -CGG-------UAUG--CGaacCCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 125937 0.66 0.902559
Target:  5'- cGCCAUgccgGCGCUguacgacuacaugguUcGGCG-CAUCGGCGAg -3'
miRNA:   3'- -CGGUA----UGCGA---------------AcCCGCgGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 49547 0.66 0.899988
Target:  5'- cGCC--GCGCcaGGGCGUCGUguUGugGAu -3'
miRNA:   3'- -CGGuaUGCGaaCCCGCGGUA--GCugCU- -5'
6786 5' -55.3 NC_001875.2 + 115758 0.66 0.899988
Target:  5'- cGgCGUGCGCcaaaccGGCGCCGUgugcguccacagCGACGAg -3'
miRNA:   3'- -CgGUAUGCGaac---CCGCGGUA------------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.