miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 12326 0.66 0.830786
Target:  5'- aCGCGCCCGgccagcGAgaGGuCGUGUUugACGGCu -3'
miRNA:   3'- -GCGCGGGCa-----CUa-CC-GCACGA--UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 89782 0.66 0.822378
Target:  5'- aCGCGCUCGUGcacGUGcGCGaacgcaGCgcggGCGGCAg -3'
miRNA:   3'- -GCGCGGGCAC---UAC-CGCa-----CGa---UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 19480 0.66 0.822378
Target:  5'- gGCGCUgGUGcUGGCG-GCUcgGGCAg -3'
miRNA:   3'- gCGCGGgCACuACCGCaCGAugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 13720 0.66 0.822378
Target:  5'- uGCGCCCGccuUGGCGgcaaugcgGUUGCG-CAg -3'
miRNA:   3'- gCGCGGGCacuACCGCa-------CGAUGCuGU- -5'
6787 3' -57.8 NC_001875.2 + 10940 0.66 0.821527
Target:  5'- uGCGCCacaaaaaCGUGGUGGCGU-UUGUGACGc -3'
miRNA:   3'- gCGCGG-------GCACUACCGCAcGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 38284 0.66 0.813798
Target:  5'- aGCGCgCGUacgacgacgcGGUGGCGaGCgcCGACAa -3'
miRNA:   3'- gCGCGgGCA----------CUACCGCaCGauGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 33899 0.66 0.813798
Target:  5'- aGCGCCuCGgGGUcGGUuugGUGCaGCGACAc -3'
miRNA:   3'- gCGCGG-GCaCUA-CCG---CACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 90985 0.66 0.813798
Target:  5'- gGCGCCCGcGGUGcGCGU-CUugG-CGa -3'
miRNA:   3'- gCGCGGGCaCUAC-CGCAcGAugCuGU- -5'
6787 3' -57.8 NC_001875.2 + 83039 0.66 0.805055
Target:  5'- uGCGCCaCGUGAUcGCG-GCUGCcguagGACc -3'
miRNA:   3'- gCGCGG-GCACUAcCGCaCGAUG-----CUGu -5'
6787 3' -57.8 NC_001875.2 + 83913 0.66 0.805055
Target:  5'- -aCGCCUGU--UGcagcacguacGCGUGCUGCGGCAg -3'
miRNA:   3'- gcGCGGGCAcuAC----------CGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 6990 0.66 0.805055
Target:  5'- aGCgGCCgGUGugGGUGUGCUGCuGGCc -3'
miRNA:   3'- gCG-CGGgCACuaCCGCACGAUG-CUGu -5'
6787 3' -57.8 NC_001875.2 + 122064 0.66 0.801514
Target:  5'- aGUGCCCG-GAUGugccGCGUGCgcuuggccucggaACGGCGg -3'
miRNA:   3'- gCGCGGGCaCUAC----CGCACGa------------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 87849 0.66 0.796157
Target:  5'- gGCGCCCGUcGGgcuguccgUGGCG-GUcgGCGACc -3'
miRNA:   3'- gCGCGGGCA-CU--------ACCGCaCGa-UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 125841 0.66 0.796157
Target:  5'- -aUGUCCGUGAUGGUGUccagGCUGCa--- -3'
miRNA:   3'- gcGCGGGCACUACCGCA----CGAUGcugu -5'
6787 3' -57.8 NC_001875.2 + 29292 0.66 0.787112
Target:  5'- gCGCGgUCGUG-UGGCGUGUcgUGCG-CGu -3'
miRNA:   3'- -GCGCgGGCACuACCGCACG--AUGCuGU- -5'
6787 3' -57.8 NC_001875.2 + 109824 0.66 0.787112
Target:  5'- aCGCGUCUGUGGauugGGCaGUGCcgGCGGa- -3'
miRNA:   3'- -GCGCGGGCACUa---CCG-CACGa-UGCUgu -5'
6787 3' -57.8 NC_001875.2 + 11006 0.66 0.783455
Target:  5'- gGCGCgCGUGcccAUGGUGUGCcugcccaugauggGCGACc -3'
miRNA:   3'- gCGCGgGCAC---UACCGCACGa------------UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 131547 0.67 0.77793
Target:  5'- gCGCGCCCGUGuccgucaacGUGGaGUuCaACGACAa -3'
miRNA:   3'- -GCGCGGGCAC---------UACCgCAcGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 33963 0.67 0.77793
Target:  5'- aCGUGCCCGUGc-GGCGcGCagcCGACc -3'
miRNA:   3'- -GCGCGGGCACuaCCGCaCGau-GCUGu -5'
6787 3' -57.8 NC_001875.2 + 50018 0.67 0.77793
Target:  5'- gGCGCgCGUGGUcgccgGGCG-GCgagGCGGCc -3'
miRNA:   3'- gCGCGgGCACUA-----CCGCaCGa--UGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.