miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 5' -54.8 NC_001875.2 + 33250 0.66 0.927944
Target:  5'- cGGCGCGGC-GCUCCGAGUugcaaaagCCGuc-GCc -3'
miRNA:   3'- -CCGUGUUGuCGAGGUUCG--------GGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 4527 0.66 0.927944
Target:  5'- cGGCGCAccgccggcuGCGGUUCCugcGGUuuGGGgGCc -3'
miRNA:   3'- -CCGUGU---------UGUCGAGGu--UCGggCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 128946 0.66 0.927944
Target:  5'- aGGCACgAGCGGCUa-AGGCgUGAGcuggGCg -3'
miRNA:   3'- -CCGUG-UUGUCGAggUUCGgGCUCa---CG- -5'
6787 5' -54.8 NC_001875.2 + 122520 0.66 0.927944
Target:  5'- cGGCcgGGCAGCUUCGccgauugcguccGGCgCGcAGUGCa -3'
miRNA:   3'- -CCGugUUGUCGAGGU------------UCGgGC-UCACG- -5'
6787 5' -54.8 NC_001875.2 + 36290 0.66 0.927405
Target:  5'- cGCGCA--GGCUCCGGGCUcagcgauCGAaUGCg -3'
miRNA:   3'- cCGUGUugUCGAGGUUCGG-------GCUcACG- -5'
6787 5' -54.8 NC_001875.2 + 84201 0.66 0.927405
Target:  5'- uGCGCAACAGCUgCCGguaguagGGCCgCGcGcGCu -3'
miRNA:   3'- cCGUGUUGUCGA-GGU-------UCGG-GCuCaCG- -5'
6787 5' -54.8 NC_001875.2 + 58828 0.66 0.920167
Target:  5'- aGGCggGCAACGGCgacaCCGuguuuaacaacauGCCCGGGUuuuuGCg -3'
miRNA:   3'- -CCG--UGUUGUCGa---GGUu------------CGGGCUCA----CG- -5'
6787 5' -54.8 NC_001875.2 + 22563 0.66 0.916685
Target:  5'- aGCGCu-CGGUUUUAAcGCCCGGGcGCg -3'
miRNA:   3'- cCGUGuuGUCGAGGUU-CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 55511 0.66 0.916685
Target:  5'- uGGCGCAGCAccuGCUCgAuggcGGCUCGGaaUGCg -3'
miRNA:   3'- -CCGUGUUGU---CGAGgU----UCGGGCUc-ACG- -5'
6787 5' -54.8 NC_001875.2 + 25912 0.66 0.916685
Target:  5'- cGGCAa---AGCggCCAAuGCCCGAGUu- -3'
miRNA:   3'- -CCGUguugUCGa-GGUU-CGGGCUCAcg -5'
6787 5' -54.8 NC_001875.2 + 12969 0.66 0.916685
Target:  5'- cGGCggGCGugGGCUCCGcGCCguGGUGg -3'
miRNA:   3'- -CCG--UGUugUCGAGGUuCGGgcUCACg -5'
6787 5' -54.8 NC_001875.2 + 29230 0.66 0.910683
Target:  5'- uGCGCAaacgcGCGGCUUCcguGGCauacugCGGGUGCg -3'
miRNA:   3'- cCGUGU-----UGUCGAGGu--UCGg-----GCUCACG- -5'
6787 5' -54.8 NC_001875.2 + 77749 0.66 0.910683
Target:  5'- cGGCGCAGCAGCUUuuguuggagaaCGGGUuuaCCGuGGUGa -3'
miRNA:   3'- -CCGUGUUGUCGAG-----------GUUCG---GGC-UCACg -5'
6787 5' -54.8 NC_001875.2 + 129436 0.66 0.910683
Target:  5'- uGCGCGACAGU--CAGGCCauuaaGAG-GCa -3'
miRNA:   3'- cCGUGUUGUCGagGUUCGGg----CUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 70639 0.66 0.910683
Target:  5'- uGUACGACGGCgCCGcGUuuGcGUGCa -3'
miRNA:   3'- cCGUGUUGUCGaGGUuCGggCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 105168 0.66 0.904434
Target:  5'- cGUACAugAGCUCUu--CCUGAauGUGCa -3'
miRNA:   3'- cCGUGUugUCGAGGuucGGGCU--CACG- -5'
6787 5' -54.8 NC_001875.2 + 72419 0.66 0.904434
Target:  5'- cGGCACGuguGCAGCUCCAcaaugGGCaaaauggUGAuUGCg -3'
miRNA:   3'- -CCGUGU---UGUCGAGGU-----UCGg------GCUcACG- -5'
6787 5' -54.8 NC_001875.2 + 2758 0.66 0.904434
Target:  5'- aGGCGcCAGCGGCUgCu--CCCGGGcagGCu -3'
miRNA:   3'- -CCGU-GUUGUCGAgGuucGGGCUCa--CG- -5'
6787 5' -54.8 NC_001875.2 + 9777 0.66 0.904434
Target:  5'- aGCGCAcGCGGCacaUCCGGGCaCUGcgcGUGCa -3'
miRNA:   3'- cCGUGU-UGUCG---AGGUUCG-GGCu--CACG- -5'
6787 5' -54.8 NC_001875.2 + 106547 0.66 0.904434
Target:  5'- uGGguCGACgAGCgcgcgaCCAGucGCCCGuAGUGCc -3'
miRNA:   3'- -CCguGUUG-UCGa-----GGUU--CGGGC-UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.