miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 3' -49.1 NC_001875.2 + 94208 0.65 0.997573
Target:  5'- aCAGCGUCuu-GCCGAGCCccaugucGUcgGcGAGCa -3'
miRNA:   3'- -GUUGUAGuuuUGGUUCGG-------CGa-C-CUCG- -5'
6797 3' -49.1 NC_001875.2 + 19448 0.66 0.997155
Target:  5'- gAACGUCGgggaucucgggGAGCuCAGGCucgggCGCUGGuGCu -3'
miRNA:   3'- gUUGUAGU-----------UUUG-GUUCG-----GCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 70752 0.66 0.997155
Target:  5'- uGACAUCAAcAugCAAGaCGCgGGcGGCg -3'
miRNA:   3'- gUUGUAGUU-UugGUUCgGCGaCC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 124782 0.66 0.997155
Target:  5'- uGGCGUCGccgcagcgGAACCAGGCCGaca-AGCg -3'
miRNA:   3'- gUUGUAGU--------UUUGGUUCGGCgaccUCG- -5'
6797 3' -49.1 NC_001875.2 + 42434 0.66 0.996623
Target:  5'- gCAGCAcgCAAAcGCCugcgucagcGGCCGCUGcGGCg -3'
miRNA:   3'- -GUUGUa-GUUU-UGGu--------UCGGCGACcUCG- -5'
6797 3' -49.1 NC_001875.2 + 81330 0.66 0.996623
Target:  5'- --uCGUCAucguGCCGcgcGGCgCGCUGGuGCc -3'
miRNA:   3'- guuGUAGUuu--UGGU---UCG-GCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 71613 0.66 0.996565
Target:  5'- gGACAUCAagcgcGAGCUcGGCCGCUucaaucugccgccGGcGCa -3'
miRNA:   3'- gUUGUAGU-----UUUGGuUCGGCGA-------------CCuCG- -5'
6797 3' -49.1 NC_001875.2 + 18667 0.66 0.99601
Target:  5'- -cGCGUCAcGGugC-GGCUGCUGG-GCg -3'
miRNA:   3'- guUGUAGU-UUugGuUCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 87699 0.66 0.99601
Target:  5'- aCGACGUgCGcuGCCucauGUCcaaGCUGGAGCa -3'
miRNA:   3'- -GUUGUA-GUuuUGGuu--CGG---CGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 127801 0.66 0.99531
Target:  5'- aAAgAUCcuAAAGCUGuuuuaCCGCUGGAGCa -3'
miRNA:   3'- gUUgUAG--UUUUGGUuc---GGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 50412 0.66 0.99531
Target:  5'- cCGACA-CGGGcacGCgCAGGCUGCUGGAa- -3'
miRNA:   3'- -GUUGUaGUUU---UG-GUUCGGCGACCUcg -5'
6797 3' -49.1 NC_001875.2 + 17264 0.66 0.99531
Target:  5'- -cGCGUUu--GCCGAcgcgcacaauccGCCGCacUGGAGCg -3'
miRNA:   3'- guUGUAGuuuUGGUU------------CGGCG--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 120744 0.67 0.994513
Target:  5'- gCGGCGcCGAGACgGGGCCGUguccaGGGCg -3'
miRNA:   3'- -GUUGUaGUUUUGgUUCGGCGac---CUCG- -5'
6797 3' -49.1 NC_001875.2 + 92498 0.67 0.994513
Target:  5'- gGGCGUCAGcgUCAGGCUGCgccUGcAGCg -3'
miRNA:   3'- gUUGUAGUUuuGGUUCGGCG---ACcUCG- -5'
6797 3' -49.1 NC_001875.2 + 109864 0.67 0.994513
Target:  5'- -cGCGUUu--GCCAAGCuggCGCUGGcGCc -3'
miRNA:   3'- guUGUAGuuuUGGUUCG---GCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 27185 0.67 0.99361
Target:  5'- gAGC-UCAAcGCCAcGCUcuacucauuuauGCUGGGGCa -3'
miRNA:   3'- gUUGuAGUUuUGGUuCGG------------CGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 88861 0.67 0.99361
Target:  5'- cCAACAUCAAGACgCAcaCCguGCUGGugauGCg -3'
miRNA:   3'- -GUUGUAGUUUUG-GUucGG--CGACCu---CG- -5'
6797 3' -49.1 NC_001875.2 + 63445 0.67 0.99361
Target:  5'- uCGGCGUCGGcGGCC-AGCCGCga-GGCg -3'
miRNA:   3'- -GUUGUAGUU-UUGGuUCGGCGaccUCG- -5'
6797 3' -49.1 NC_001875.2 + 40437 0.67 0.99361
Target:  5'- --cCAUCAauugcGAGCU--GCCGCUGGcGCa -3'
miRNA:   3'- guuGUAGU-----UUUGGuuCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 22759 0.67 0.992591
Target:  5'- cCAGCA-CAucACCGgcacacAGCgGCUGGuGCa -3'
miRNA:   3'- -GUUGUaGUuuUGGU------UCGgCGACCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.