miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 5' -57 NC_001875.2 + 120963 0.66 0.850627
Target:  5'- ----gUUGCGCG-GCAGCgCCACCGa -3'
miRNA:   3'- cucuaGAUGCGCgCGUUGgGGUGGCa -5'
6797 5' -57 NC_001875.2 + 26243 0.66 0.850627
Target:  5'- ---cUCUugGCGCugcgGCGugUCCACCGc -3'
miRNA:   3'- cucuAGAugCGCG----CGUugGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 106547 0.66 0.850627
Target:  5'- uGGGUCgacgaGCGCGCGACCaguCGcCCGUa -3'
miRNA:   3'- cUCUAGaug--CGCGCGUUGGg--GU-GGCA- -5'
6797 5' -57 NC_001875.2 + 84162 0.66 0.850627
Target:  5'- uGAGAaacgCgcgGCGCGcCGCGGCCgCGuCCGUg -3'
miRNA:   3'- -CUCUa---Ga--UGCGC-GCGUUGGgGU-GGCA- -5'
6797 5' -57 NC_001875.2 + 92519 0.66 0.842584
Target:  5'- ----cCUGCaGCGCGCGcACgCCGCCGg -3'
miRNA:   3'- cucuaGAUG-CGCGCGU-UGgGGUGGCa -5'
6797 5' -57 NC_001875.2 + 40448 0.66 0.840133
Target:  5'- cGAGA---ACGUGgGCAGCCCCgagggcguggugguGCCGg -3'
miRNA:   3'- -CUCUagaUGCGCgCGUUGGGG--------------UGGCa -5'
6797 5' -57 NC_001875.2 + 101368 0.66 0.840133
Target:  5'- cGAGuUCUuuuacaaguugcaaACGCGCGCAACgCgCGCCa- -3'
miRNA:   3'- -CUCuAGA--------------UGCGCGCGUUGgG-GUGGca -5'
6797 5' -57 NC_001875.2 + 110730 0.66 0.840133
Target:  5'- gGAGAacgCgggGCGCGUGCAguuuaagcgcggcgACCgCCGCCGc -3'
miRNA:   3'- -CUCUa--Ga--UGCGCGCGU--------------UGG-GGUGGCa -5'
6797 5' -57 NC_001875.2 + 41148 0.66 0.834348
Target:  5'- -------cCGCGCcgGCAACCCCAUCGUc -3'
miRNA:   3'- cucuagauGCGCG--CGUUGGGGUGGCA- -5'
6797 5' -57 NC_001875.2 + 42317 0.66 0.834348
Target:  5'- cAGAUCgaGCGCGCccaGCGGCCCCAggCGg -3'
miRNA:   3'- cUCUAGa-UGCGCG---CGUUGGGGUg-GCa -5'
6797 5' -57 NC_001875.2 + 112208 0.66 0.834348
Target:  5'- uGGGGUCUACGCGCuGCAGCga-GgCGUg -3'
miRNA:   3'- -CUCUAGAUGCGCG-CGUUGgggUgGCA- -5'
6797 5' -57 NC_001875.2 + 5512 0.66 0.834348
Target:  5'- cGGcgC-ACGCGCGCAguuuacGCCggCCGCCGUu -3'
miRNA:   3'- cUCuaGaUGCGCGCGU------UGG--GGUGGCA- -5'
6797 5' -57 NC_001875.2 + 110079 0.66 0.825926
Target:  5'- aGAGAcgCUGCGCGUGgaGGCCgCCACgCGc -3'
miRNA:   3'- -CUCUa-GAUGCGCGCg-UUGG-GGUG-GCa -5'
6797 5' -57 NC_001875.2 + 98451 0.66 0.825926
Target:  5'- cGAGcgCUAC-CGCGCAAUgcuguaCCCGCUGc -3'
miRNA:   3'- -CUCuaGAUGcGCGCGUUG------GGGUGGCa -5'
6797 5' -57 NC_001875.2 + 31919 0.66 0.817326
Target:  5'- -cGcgCUGCaccGCGCGCGGgCCCGCuCGUu -3'
miRNA:   3'- cuCuaGAUG---CGCGCGUUgGGGUG-GCA- -5'
6797 5' -57 NC_001875.2 + 18019 0.66 0.817326
Target:  5'- gGGGcgCUACGCGCGCGACauugaCGUg -3'
miRNA:   3'- -CUCuaGAUGCGCGCGUUGgggugGCA- -5'
6797 5' -57 NC_001875.2 + 87193 0.66 0.817326
Target:  5'- cGAGAUCU-UGaCGCGCGACCgCGCacaGg -3'
miRNA:   3'- -CUCUAGAuGC-GCGCGUUGGgGUGg--Ca -5'
6797 5' -57 NC_001875.2 + 91416 0.66 0.817326
Target:  5'- -cGAUg-GCGCGCGuCAGCCCCuCgGUg -3'
miRNA:   3'- cuCUAgaUGCGCGC-GUUGGGGuGgCA- -5'
6797 5' -57 NC_001875.2 + 88237 0.66 0.817326
Target:  5'- cGGcgCaagcgGCGCGCGCcGCCgcugCCGCCGUa -3'
miRNA:   3'- cUCuaGa----UGCGCGCGuUGG----GGUGGCA- -5'
6797 5' -57 NC_001875.2 + 119051 0.66 0.817326
Target:  5'- -uGGUCcgGCGUGCGCAugugcgcggcGCCCCgGCUGg -3'
miRNA:   3'- cuCUAGa-UGCGCGCGU----------UGGGG-UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.