miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 3' -56.8 NC_001875.2 + 3875 0.66 0.853024
Target:  5'- gCAGCACcgcgccgccaaGCUGGGCAggcuguacaAGGcuaagaagcuGCGCGCUgAg -3'
miRNA:   3'- -GUUGUG-----------CGACCCGU---------UCC----------UGCGCGAgU- -5'
6801 3' -56.8 NC_001875.2 + 51540 0.66 0.853024
Target:  5'- gGACGCGCUGGc----GACGgCGCUCGu -3'
miRNA:   3'- gUUGUGCGACCcguucCUGC-GCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 9815 0.66 0.848224
Target:  5'- ---aACGUUGGGCc-GGACcagugcuacccaaaaGCGCUCAu -3'
miRNA:   3'- guugUGCGACCCGuuCCUG---------------CGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 122546 0.66 0.844984
Target:  5'- cCGGCGCGCaGuGCAcauguauaucgGGGACGCGCg-- -3'
miRNA:   3'- -GUUGUGCGaCcCGU-----------UCCUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 81465 0.66 0.844984
Target:  5'- -uACACGCUGGuccGCGgucAGuGGCGCGCg-- -3'
miRNA:   3'- guUGUGCGACC---CGU---UC-CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 113578 0.66 0.836746
Target:  5'- aCGGCGCGCcauUGGGCcAGcACgGCGUUCGa -3'
miRNA:   3'- -GUUGUGCG---ACCCGuUCcUG-CGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 52841 0.66 0.835911
Target:  5'- gGACACGCUGuccagcuGGUu--GACGCGCUUc -3'
miRNA:   3'- gUUGUGCGAC-------CCGuucCUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 67470 0.66 0.828317
Target:  5'- uGACGCGCc-GGCAcAGGAUGCuCUCGc -3'
miRNA:   3'- gUUGUGCGacCCGU-UCCUGCGcGAGU- -5'
6801 3' -56.8 NC_001875.2 + 41685 0.66 0.828317
Target:  5'- aCAGCGCGUcaauuuccUGGGCcAGGGCguaugcgcgGCGCUg- -3'
miRNA:   3'- -GUUGUGCG--------ACCCGuUCCUG---------CGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 126594 0.66 0.828317
Target:  5'- -cACACGCgaaaguagauugUGGGCu-GGugGCGCa-- -3'
miRNA:   3'- guUGUGCG------------ACCCGuuCCugCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 72340 0.66 0.828317
Target:  5'- gCGGCACaugGGGCAcucGACGCGCUUg -3'
miRNA:   3'- -GUUGUGcgaCCCGUuc-CUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 43283 0.66 0.823171
Target:  5'- aCAACAUGUaggggauguuaaauaUGGGguAGcGGCGCGCgcgCGg -3'
miRNA:   3'- -GUUGUGCG---------------ACCCguUC-CUGCGCGa--GU- -5'
6801 3' -56.8 NC_001875.2 + 48694 0.66 0.819705
Target:  5'- aCAGCACGCUuaucacGGaGCAGGaaGACGUGCa-- -3'
miRNA:   3'- -GUUGUGCGA------CC-CGUUC--CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 88280 0.66 0.819705
Target:  5'- gCAugACGCU-GGCGGGcGACGCGgUg- -3'
miRNA:   3'- -GUugUGCGAcCCGUUC-CUGCGCgAgu -5'
6801 3' -56.8 NC_001875.2 + 8190 0.66 0.819705
Target:  5'- uGACuuGCUGGGUggGGuCGC-CUUg -3'
miRNA:   3'- gUUGugCGACCCGuuCCuGCGcGAGu -5'
6801 3' -56.8 NC_001875.2 + 15255 0.66 0.819705
Target:  5'- cCAuCACGCUGcgcaccaccGGCGGcGugGUGCUCAa -3'
miRNA:   3'- -GUuGUGCGAC---------CCGUUcCugCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 29032 0.66 0.819705
Target:  5'- gCGGCG-GCgacGGGCuaaacGACGCGCUCAa -3'
miRNA:   3'- -GUUGUgCGa--CCCGuuc--CUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 66608 0.66 0.810918
Target:  5'- -uGCAUGUUgucGGGCAGcGuGGCGCGCUUg -3'
miRNA:   3'- guUGUGCGA---CCCGUU-C-CUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 25277 0.67 0.801965
Target:  5'- aGACGgGCacuacGGGCGAcuGGucGCGCGCUCGu -3'
miRNA:   3'- gUUGUgCGa----CCCGUU--CC--UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 90667 0.67 0.801965
Target:  5'- --cUACGCUGGcGCuGGGGCuGCGCa-- -3'
miRNA:   3'- guuGUGCGACC-CGuUCCUG-CGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.