miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 70726 0.66 0.970058
Target:  5'- ---uUGGC-CACgCGUcaACGCCaGCCCCu -3'
miRNA:   3'- cauuAUCGcGUGaGCA--UGUGG-CGGGG- -5'
6815 5' -53 NC_001875.2 + 55093 0.66 0.970058
Target:  5'- ----cAGCGCGucCUUGUGC-UCGUCCCc -3'
miRNA:   3'- cauuaUCGCGU--GAGCAUGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 34683 0.66 0.970058
Target:  5'- ----gGGCuGCGCgUCaaGgGCCGCCCCa -3'
miRNA:   3'- cauuaUCG-CGUG-AGcaUgUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 105470 0.66 0.970058
Target:  5'- -----uGCGCACUguuuugcggccgCGUACAUgGCCaCCu -3'
miRNA:   3'- cauuauCGCGUGA------------GCAUGUGgCGG-GG- -5'
6815 5' -53 NC_001875.2 + 5136 0.66 0.970058
Target:  5'- ------cCGCGgaCGUGCGCCGCUUCg -3'
miRNA:   3'- cauuaucGCGUgaGCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 19902 0.66 0.970058
Target:  5'- -----uGCGCuuuuagcuGCUCGUacggcagcuGCACCGgCCCg -3'
miRNA:   3'- cauuauCGCG--------UGAGCA---------UGUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 82963 0.66 0.970058
Target:  5'- ----gGGCGCGucCUCG-GCgACCGaCCCCu -3'
miRNA:   3'- cauuaUCGCGU--GAGCaUG-UGGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 111953 0.66 0.969756
Target:  5'- cUAAaAGCGCACgCGUuucgcaaACGgCGCCCg -3'
miRNA:   3'- cAUUaUCGCGUGaGCA-------UGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 120240 0.66 0.969145
Target:  5'- uGUGGUAGUGguaacgacgguucuCACguaggCGcACACCGCUCCc -3'
miRNA:   3'- -CAUUAUCGC--------------GUGa----GCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5931 0.66 0.96694
Target:  5'- -gGGUAGCGCcgcGCagGUggGCGCgGCCUCg -3'
miRNA:   3'- caUUAUCGCG---UGagCA--UGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 21097 0.66 0.96694
Target:  5'- -cGGUcGcCGCGCUUaaacUGCACgCGCCCCg -3'
miRNA:   3'- caUUAuC-GCGUGAGc---AUGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 88505 0.66 0.96694
Target:  5'- aGUAcGUGGUGCGCggCGgcaaccACGCCGaCCCg -3'
miRNA:   3'- -CAU-UAUCGCGUGa-GCa-----UGUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 38115 0.66 0.96694
Target:  5'- ----gAGCGCAgUCG-ACuaaGCUGUCCCu -3'
miRNA:   3'- cauuaUCGCGUgAGCaUG---UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 89769 0.66 0.966616
Target:  5'- aUGGUGGUcggcgacGCGCUCGUGCACgUGCgCg -3'
miRNA:   3'- cAUUAUCG-------CGUGAGCAUGUG-GCGgGg -5'
6815 5' -53 NC_001875.2 + 51972 0.66 0.966616
Target:  5'- -----cGCGCGCgCGUggaccacGCGCCaCCCCa -3'
miRNA:   3'- cauuauCGCGUGaGCA-------UGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 67887 0.66 0.9636
Target:  5'- ----cAGCGCGgUCGgcgACAgCGCCUUc -3'
miRNA:   3'- cauuaUCGCGUgAGCa--UGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 125989 0.66 0.9636
Target:  5'- -----cGCGUGCUgGUGCACUGCUa- -3'
miRNA:   3'- cauuauCGCGUGAgCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 82198 0.66 0.9636
Target:  5'- ----gGGCGCcggcggccGCUCGUGuCGCCGCUg- -3'
miRNA:   3'- cauuaUCGCG--------UGAGCAU-GUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 110170 0.66 0.9636
Target:  5'- -gAGU-GCGCGCUUGgcCuCCGCCUUg -3'
miRNA:   3'- caUUAuCGCGUGAGCauGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 110568 0.66 0.9636
Target:  5'- -cAAUGuCGUGCUCGUA-GCCGCgCCg -3'
miRNA:   3'- caUUAUcGCGUGAGCAUgUGGCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.