miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 56942 1.13 0.0025
Target:  5'- cGUAAUAGCGCACUCGUACACCGCCCCg -3'
miRNA:   3'- -CAUUAUCGCGUGAGCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5013 0.71 0.764017
Target:  5'- -----uGUGCACUU-UGCGCCGCCUCg -3'
miRNA:   3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 311 0.71 0.783272
Target:  5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3'
miRNA:   3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 105470 0.66 0.970058
Target:  5'- -----uGCGCACUguuuugcggccgCGUACAUgGCCaCCu -3'
miRNA:   3'- cauuauCGCGUGA------------GCAUGUGgCGG-GG- -5'
6815 5' -53 NC_001875.2 + 48818 0.76 0.516269
Target:  5'- --cGUGGCGCACUCGcUGCGCgCGgUCCa -3'
miRNA:   3'- cauUAUCGCGUGAGC-AUGUG-GCgGGG- -5'
6815 5' -53 NC_001875.2 + 71602 0.76 0.526368
Target:  5'- ---cUAGCGCGCUCGUGC-UCGCCa- -3'
miRNA:   3'- cauuAUCGCGUGAGCAUGuGGCGGgg -5'
6815 5' -53 NC_001875.2 + 63896 0.75 0.577841
Target:  5'- aGUAAgaAGCGCGC-CGUgGCGCCGCCgCa -3'
miRNA:   3'- -CAUUa-UCGCGUGaGCA-UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 62977 0.74 0.630326
Target:  5'- uGUAGUugucGGgGCACUCGcGCACCGCgugcgaCCCg -3'
miRNA:   3'- -CAUUA----UCgCGUGAGCaUGUGGCG------GGG- -5'
6815 5' -53 NC_001875.2 + 120684 0.73 0.661898
Target:  5'- -cGAUGcGCGCGCg-GUACGCCuCCCCg -3'
miRNA:   3'- caUUAU-CGCGUGagCAUGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 77494 0.71 0.762062
Target:  5'- gGUAccAGCGCGCgcauuccuucaaCGUGCACUuuuGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGUGa-----------GCAUGUGG---CGGGG- -5'
6815 5' -53 NC_001875.2 + 18532 0.73 0.703594
Target:  5'- -gAGUA-CGCGCUCGUguuugGCAUCGCCaCCg -3'
miRNA:   3'- caUUAUcGCGUGAGCA-----UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 84133 0.73 0.661898
Target:  5'- ----cAGCagGCAgUCGUGCACuUGCCCCg -3'
miRNA:   3'- cauuaUCG--CGUgAGCAUGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 10410 0.78 0.402512
Target:  5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 92555 0.72 0.713882
Target:  5'- -----cGCGCACUUGgugucgGCgggcagaaGCCGCCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCa-----UG--------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 18274 0.77 0.438717
Target:  5'- -cAAUGGCGCGC-CGUGCgcgACCGCgCCg -3'
miRNA:   3'- caUUAUCGCGUGaGCAUG---UGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 2904 0.73 0.661898
Target:  5'- ---uUAGC-CGCUCGUGCcuauucACCGCCUCg -3'
miRNA:   3'- cauuAUCGcGUGAGCAUG------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 18453 0.72 0.744265
Target:  5'- --cGUGGCGCGCgaaUCGcGCGCCGCUgaCCg -3'
miRNA:   3'- cauUAUCGCGUG---AGCaUGUGGCGG--GG- -5'
6815 5' -53 NC_001875.2 + 21670 0.71 0.773711
Target:  5'- ----gAGCGCAgUgCG-ACGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgA-GCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 124375 0.76 0.505251
Target:  5'- -cAAUGGCGCagaaucgGC-CGUACACCGCCgCa -3'
miRNA:   3'- caUUAUCGCG-------UGaGCAUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 92786 0.75 0.567437
Target:  5'- -cAAUGGCcauGCGCUUgcgGUACAgCGCCCCg -3'
miRNA:   3'- caUUAUCG---CGUGAG---CAUGUgGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.