miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6837 5' -54.9 NC_001875.2 + 42292 0.66 0.893652
Target:  5'- cGGCaGGCuGCGCGUgc--GUAUAGAc -3'
miRNA:   3'- aCCGcCCGuCGCGCGaguuCAUAUUU- -5'
6837 5' -54.9 NC_001875.2 + 103003 0.66 0.886623
Target:  5'- gUGGCGugcGGCaAGUGCGCUgCGGGcGUGAc -3'
miRNA:   3'- -ACCGC---CCG-UCGCGCGA-GUUCaUAUUu -5'
6837 5' -54.9 NC_001875.2 + 83006 0.66 0.882289
Target:  5'- cGGCGGGCuugaagcggcgccguAGCGCGCg-GAGcAUGu- -3'
miRNA:   3'- aCCGCCCG---------------UCGCGCGagUUCaUAUuu -5'
6837 5' -54.9 NC_001875.2 + 57697 0.66 0.87184
Target:  5'- cGGCGGGCGccGCGCcCUCGAa------ -3'
miRNA:   3'- aCCGCCCGU--CGCGcGAGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 70770 0.66 0.87184
Target:  5'- -cGCGGGCGGCGCaguuuuuguGCagCAAGUGg--- -3'
miRNA:   3'- acCGCCCGUCGCG---------CGa-GUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 65598 0.66 0.87184
Target:  5'- uUGGCGGcGCAGUGCgaaacGCUCAcccGGUuuGUGu- -3'
miRNA:   3'- -ACCGCC-CGUCGCG-----CGAGU---UCA--UAUuu -5'
6837 5' -54.9 NC_001875.2 + 58038 0.66 0.864096
Target:  5'- -cGUGGGCGGCGCGCUg--------- -3'
miRNA:   3'- acCGCCCGUCGCGCGAguucauauuu -5'
6837 5' -54.9 NC_001875.2 + 72567 0.66 0.864096
Target:  5'- gGcGCGGGCGcGgGCGCUgCGGGUGc--- -3'
miRNA:   3'- aC-CGCCCGU-CgCGCGA-GUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 126523 0.66 0.864096
Target:  5'- cGGCGagcaGGUAGCGCGCaaUgGAGUGg--- -3'
miRNA:   3'- aCCGC----CCGUCGCGCG--AgUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 82054 0.67 0.856125
Target:  5'- uUGG-GGGCGGCGCGC---AGUAc--- -3'
miRNA:   3'- -ACCgCCCGUCGCGCGaguUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 37975 0.67 0.839531
Target:  5'- cGGCGGcCuGCGCGCUCAGc------ -3'
miRNA:   3'- aCCGCCcGuCGCGCGAGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 22913 0.67 0.839531
Target:  5'- uUGGuCGGGCAGCGcCGCUUuaauGUc---- -3'
miRNA:   3'- -ACC-GCCCGUCGC-GCGAGuu--CAuauuu -5'
6837 5' -54.9 NC_001875.2 + 52512 0.67 0.834391
Target:  5'- cGGCGccaaaGGCAGCgccGCGCUCAucgaaagcacgcgccAGUAUGc- -3'
miRNA:   3'- aCCGC-----CCGUCG---CGCGAGU---------------UCAUAUuu -5'
6837 5' -54.9 NC_001875.2 + 62823 0.67 0.830924
Target:  5'- cUGGUcgGGGCAGCGCGCcacCAcGUGc--- -3'
miRNA:   3'- -ACCG--CCCGUCGCGCGa--GUuCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 3003 0.67 0.830924
Target:  5'- gGGCGGGUugaAGUGCGCgucgccgugCAAGuUGUAc- -3'
miRNA:   3'- aCCGCCCG---UCGCGCGa--------GUUC-AUAUuu -5'
6837 5' -54.9 NC_001875.2 + 131762 0.67 0.830924
Target:  5'- cGGauCGGGCGGCGCG-UCAuuGGUGUc-- -3'
miRNA:   3'- aCC--GCCCGUCGCGCgAGU--UCAUAuuu -5'
6837 5' -54.9 NC_001875.2 + 84989 0.67 0.830924
Target:  5'- gUGGUGGGCauuuccagcAGCGUGCgCAAcGUGUGc- -3'
miRNA:   3'- -ACCGCCCG---------UCGCGCGaGUU-CAUAUuu -5'
6837 5' -54.9 NC_001875.2 + 23197 0.67 0.822121
Target:  5'- uUGGCGGuuGCAGUa-GCUCAAGUAg--- -3'
miRNA:   3'- -ACCGCC--CGUCGcgCGAGUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 8822 0.67 0.822121
Target:  5'- gGGCaGGCGGCGCGCcCAAc------ -3'
miRNA:   3'- aCCGcCCGUCGCGCGaGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 79131 0.67 0.822121
Target:  5'- cGGCGGGCgccgcGGCGgGCUCGu------- -3'
miRNA:   3'- aCCGCCCG-----UCGCgCGAGUucauauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.