miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 35813 1.11 0.000716
Target:  5'- aACUCGCGCGCCACGCACAGCAUGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCGUGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 18665 0.72 0.347261
Target:  5'- ---aGCGCGUCACgGUGCGGCugcUGGGCg -3'
miRNA:   3'- ugagCGCGCGGUG-CGUGUCGu--ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 90670 0.72 0.347261
Target:  5'- cGCUgGCGCugggGCUGCGCACAGuCAacgaGGGCa -3'
miRNA:   3'- -UGAgCGCG----CGGUGCGUGUC-GUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 57669 0.66 0.722986
Target:  5'- aGCUCGCaaaacGCGuCCAaGCugGCGGCGgcGGGCg -3'
miRNA:   3'- -UGAGCG-----CGC-GGUgCG--UGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 95217 0.75 0.223355
Target:  5'- aGCUCGUGUGCCGCGaucgguGguGCAaGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCg-----UguCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 89995 0.75 0.223355
Target:  5'- aGCUCGC-CGCCGCgGCGCGGCAacUGGacGCg -3'
miRNA:   3'- -UGAGCGcGCGGUG-CGUGUCGU--ACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 90044 0.75 0.251806
Target:  5'- gGCgCGCGUGCCgGCGgaaauCACaAGCAUGGGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGC-----GUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 96448 0.75 0.251806
Target:  5'- cGCUcgCGCGCGCCACGgACAGCAgc-GCc -3'
miRNA:   3'- -UGA--GCGCGCGGUGCgUGUCGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 66890 0.74 0.279253
Target:  5'- aAUUCGCgGCGCCAucguguuuugcauaaUGCugGGCAcGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGU---------------GCGugUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 19848 0.73 0.324801
Target:  5'- aACagCGCGCaagacucgGCCGCGuCGCGGCGcGGGCg -3'
miRNA:   3'- -UGa-GCGCG--------CGGUGC-GUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 130212 0.73 0.310438
Target:  5'- -aUCGCGUGUCGgGCACAGCGcguucuuugccGGGCa -3'
miRNA:   3'- ugAGCGCGCGGUgCGUGUCGUa----------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 2294 0.74 0.27027
Target:  5'- uGCgcgCGCGCcgugGCCGCGCGCAGCuc-GGCc -3'
miRNA:   3'- -UGa--GCGCG----CGGUGCGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 23997 0.78 0.153993
Target:  5'- aACUCGCGCGCguCGCAaGGCGcaccGGGCg -3'
miRNA:   3'- -UGAGCGCGCGguGCGUgUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 120417 0.73 0.317558
Target:  5'- gGCUggaaGUGCGCaguCGCACGGCG-GGGCa -3'
miRNA:   3'- -UGAg---CGCGCGgu-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 12672 0.77 0.166092
Target:  5'- --aCGCGCGCCGCGUuggccgggugugGCGGCAaaauguuaUGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGCG------------UGUCGU--------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 73025 0.74 0.257843
Target:  5'- --aCGCGCGCauuucCGCGUGCAGC-UGGGCc -3'
miRNA:   3'- ugaGCGCGCG-----GUGCGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 79871 0.73 0.324801
Target:  5'- --gCGCGUGguCCACGCGCGcGCGUGcGGCa -3'
miRNA:   3'- ugaGCGCGC--GGUGCGUGU-CGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 130817 0.72 0.347261
Target:  5'- cCUCGgGCcccGCCACGCGCuGCAagaacGGGCc -3'
miRNA:   3'- uGAGCgCG---CGGUGCGUGuCGUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 89268 0.77 0.174625
Target:  5'- cGCgcgCGUGCGCCGaccugGCGCGGC-UGGGCg -3'
miRNA:   3'- -UGa--GCGCGCGGUg----CGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 20014 0.75 0.240083
Target:  5'- gGCUCGCGCagccGUCACGCGgAGCAgccaGGCg -3'
miRNA:   3'- -UGAGCGCG----CGGUGCGUgUCGUac--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.