miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 5' -56 NC_001875.2 + 130812 0.66 0.896698
Target:  5'- ---gUGCGCCucggGCcccGCCACGCGCUg- -3'
miRNA:   3'- ccaaACGCGGu---UGu--CGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 17335 0.66 0.896698
Target:  5'- cGG-UUGCGCC----GCCGCGCGaCCGc -3'
miRNA:   3'- -CCaAACGCGGuuguCGGUGUGCgGGC- -5'
6842 5' -56 NC_001875.2 + 66479 0.66 0.896698
Target:  5'- cGUUUGCGCCcaccacgcuuAAgAGCUACaagucGCGCCUc -3'
miRNA:   3'- cCAAACGCGG----------UUgUCGGUG-----UGCGGGc -5'
6842 5' -56 NC_001875.2 + 99911 0.66 0.896698
Target:  5'- ----aGCGCaacgAGCgGGCCGCGCGCgCGg -3'
miRNA:   3'- ccaaaCGCGg---UUG-UCGGUGUGCGgGC- -5'
6842 5' -56 NC_001875.2 + 31666 0.66 0.896698
Target:  5'- ----cGCGCUuuuCAuGCCGCucGCGCCCa -3'
miRNA:   3'- ccaaaCGCGGuu-GU-CGGUG--UGCGGGc -5'
6842 5' -56 NC_001875.2 + 84357 0.66 0.896698
Target:  5'- cGgcUGCGCCggUAGgUGCGCgGCCUGc -3'
miRNA:   3'- cCaaACGCGGuuGUCgGUGUG-CGGGC- -5'
6842 5' -56 NC_001875.2 + 77659 0.66 0.890004
Target:  5'- uGGUggaCGCCAACGcagcGCCGC-UGUCCGa -3'
miRNA:   3'- -CCAaacGCGGUUGU----CGGUGuGCGGGC- -5'
6842 5' -56 NC_001875.2 + 87951 0.66 0.890004
Target:  5'- ----cGCGCCucuGCAagaccaaauGCCACcgcaaACGCCCGc -3'
miRNA:   3'- ccaaaCGCGGu--UGU---------CGGUG-----UGCGGGC- -5'
6842 5' -56 NC_001875.2 + 110383 0.66 0.890004
Target:  5'- ---aUG-GCCGACGGCUcguGCGUGCCCGu -3'
miRNA:   3'- ccaaACgCGGUUGUCGG---UGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 109257 0.66 0.890004
Target:  5'- ------aGCCGGcCGGCCAacgcgcCGCGCCCGg -3'
miRNA:   3'- ccaaacgCGGUU-GUCGGU------GUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 75530 0.66 0.890004
Target:  5'- ---aUGUGCCcGCcaccGCCAUACGCuuGg -3'
miRNA:   3'- ccaaACGCGGuUGu---CGGUGUGCGggC- -5'
6842 5' -56 NC_001875.2 + 11772 0.66 0.890004
Target:  5'- cGUcauCGCCAACcucGCgGCGCGCCUGa -3'
miRNA:   3'- cCAaacGCGGUUGu--CGgUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 113753 0.66 0.890004
Target:  5'- ----aGCGaaaCgAGCAGCCGCcguaaugaggucGCGCCCGa -3'
miRNA:   3'- ccaaaCGCg--G-UUGUCGGUG------------UGCGGGC- -5'
6842 5' -56 NC_001875.2 + 32153 0.66 0.890004
Target:  5'- gGGUUU-CGUuCGACAGCCugAUGuacCCCGa -3'
miRNA:   3'- -CCAAAcGCG-GUUGUCGGugUGC---GGGC- -5'
6842 5' -56 NC_001875.2 + 69365 0.66 0.890004
Target:  5'- cGGcgUGCGCCc---GCUGCGCGCCg- -3'
miRNA:   3'- -CCaaACGCGGuuguCGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 24330 0.66 0.890004
Target:  5'- ----gGCGCCAACAagcguGCCGCgGCGUUCa -3'
miRNA:   3'- ccaaaCGCGGUUGU-----CGGUG-UGCGGGc -5'
6842 5' -56 NC_001875.2 + 77392 0.66 0.890004
Target:  5'- uGUgcgGCGCCGcggcuaacgACcGCCACGCGCUg- -3'
miRNA:   3'- cCAaa-CGCGGU---------UGuCGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 52084 0.66 0.890004
Target:  5'- uGUUUGCGCacauGCucGCCACcaGCGCCg- -3'
miRNA:   3'- cCAAACGCGgu--UGu-CGGUG--UGCGGgc -5'
6842 5' -56 NC_001875.2 + 64083 0.66 0.890004
Target:  5'- gGGUUUGgCGCCGACAGaCCGUACaGCg-- -3'
miRNA:   3'- -CCAAAC-GCGGUUGUC-GGUGUG-CGggc -5'
6842 5' -56 NC_001875.2 + 8816 0.66 0.890004
Target:  5'- cGGgUUGgGCa---GGCgGCGCGCCCa -3'
miRNA:   3'- -CCaAACgCGguugUCGgUGUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.