miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 3' -57.4 NC_001875.2 + 71595 0.66 0.816688
Target:  5'- aUUUCcucuaGCgCGCUCGUGCUCGCCa-- -3'
miRNA:   3'- aAAAGua---CG-GCGAGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 2286 0.66 0.816688
Target:  5'- ------cGUCGUgaugCGCGCgCGCCGUGg -3'
miRNA:   3'- aaaaguaCGGCGa---GCGCGgGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 125123 0.66 0.807829
Target:  5'- -gUUUAUGUCGCcCGCGCUCACa--- -3'
miRNA:   3'- aaAAGUACGGCGaGCGCGGGUGgcac -5'
6847 3' -57.4 NC_001875.2 + 12390 0.66 0.789631
Target:  5'- ----gGUGCCGCUCGuCGUcgggCCGCUGUu -3'
miRNA:   3'- aaaagUACGGCGAGC-GCG----GGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 39367 0.66 0.789631
Target:  5'- ------cGCCGuCUCGUGCCUACCcUGc -3'
miRNA:   3'- aaaaguaCGGC-GAGCGCGGGUGGcAC- -5'
6847 3' -57.4 NC_001875.2 + 117430 0.66 0.789631
Target:  5'- ---cCAUGCCGgUgGCGCCCAUa--- -3'
miRNA:   3'- aaaaGUACGGCgAgCGCGGGUGgcac -5'
6847 3' -57.4 NC_001875.2 + 122244 0.66 0.780309
Target:  5'- ---gCGUcGuuGCaCGCGCCCACCGc- -3'
miRNA:   3'- aaaaGUA-CggCGaGCGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 110578 0.66 0.780309
Target:  5'- --cUCGUaGCCGCgccgCGCGCgCGCC-UGg -3'
miRNA:   3'- aaaAGUA-CGGCGa---GCGCGgGUGGcAC- -5'
6847 3' -57.4 NC_001875.2 + 74693 0.66 0.780309
Target:  5'- uUUUUCGacccGCCGUUgGCGCCCACg--- -3'
miRNA:   3'- -AAAAGUa---CGGCGAgCGCGGGUGgcac -5'
6847 3' -57.4 NC_001875.2 + 55385 0.66 0.779369
Target:  5'- --cUCAUugaguggGCCGCcagCGCGCCCcCCGa- -3'
miRNA:   3'- aaaAGUA-------CGGCGa--GCGCGGGuGGCac -5'
6847 3' -57.4 NC_001875.2 + 124282 0.66 0.77085
Target:  5'- ----gGUGCCGCUCGU--CCGCCGg- -3'
miRNA:   3'- aaaagUACGGCGAGCGcgGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 79890 0.67 0.761264
Target:  5'- ---gCGUGCgGCacgUCGCGCCCAaaGUa -3'
miRNA:   3'- aaaaGUACGgCG---AGCGCGGGUggCAc -5'
6847 3' -57.4 NC_001875.2 + 64614 0.67 0.75156
Target:  5'- --gUCggGCCacccGUUUGCGCCCACCa-- -3'
miRNA:   3'- aaaAGuaCGG----CGAGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 77914 0.67 0.75156
Target:  5'- --aUCGUGCgCGCcaaCGCGCCCGCa--- -3'
miRNA:   3'- aaaAGUACG-GCGa--GCGCGGGUGgcac -5'
6847 3' -57.4 NC_001875.2 + 124865 0.67 0.75156
Target:  5'- ---aCcgGCCGCUUugGCGCCCugCa-- -3'
miRNA:   3'- aaaaGuaCGGCGAG--CGCGGGugGcac -5'
6847 3' -57.4 NC_001875.2 + 46558 0.67 0.741748
Target:  5'- ------cGCCGCcCGCGCaaACCGUGu -3'
miRNA:   3'- aaaaguaCGGCGaGCGCGggUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 68115 0.67 0.731837
Target:  5'- ------cGCCgGCgaaGCGCCCGCCGUc -3'
miRNA:   3'- aaaaguaCGG-CGag-CGCGGGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 62590 0.67 0.731837
Target:  5'- --cUCGaGCCGCggcccagCGCGCCguucgacgcCGCCGUGu -3'
miRNA:   3'- aaaAGUaCGGCGa------GCGCGG---------GUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 30095 0.67 0.721838
Target:  5'- cUUUguUGCUGUgCGCGCUguaCGCCGUGa -3'
miRNA:   3'- aAAAguACGGCGaGCGCGG---GUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 112703 0.67 0.721838
Target:  5'- ---aCGUGUCGCUgacgGCGCC-GCCGUGg -3'
miRNA:   3'- aaaaGUACGGCGAg---CGCGGgUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.