miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 65379 0.66 0.894586
Target:  5'- ---aACCGCGCGcGCGUGGUggGgCUg -3'
miRNA:   3'- uggcUGGCGCGCaUGCACCGuuU-GAa -5'
6853 3' -55.7 NC_001875.2 + 93196 0.66 0.894586
Target:  5'- uCCGGCCaGCGCGcaaUACGcGGCGucACUg -3'
miRNA:   3'- uGGCUGG-CGCGC---AUGCaCCGUu-UGAa -5'
6853 3' -55.7 NC_001875.2 + 22597 0.66 0.890512
Target:  5'- gGCCGGCCG-GCuGUACGguuucgugucucugGGCAuGCUa -3'
miRNA:   3'- -UGGCUGGCgCG-CAUGCa-------------CCGUuUGAa -5'
6853 3' -55.7 NC_001875.2 + 39174 0.66 0.887748
Target:  5'- gGCgGGCCG-GCGguUGCGUGGCGuuuACg- -3'
miRNA:   3'- -UGgCUGGCgCGC--AUGCACCGUu--UGaa -5'
6853 3' -55.7 NC_001875.2 + 77986 0.66 0.887748
Target:  5'- gGCCGACgGUGCcaGCGUGcGCGAGa-- -3'
miRNA:   3'- -UGGCUGgCGCGcaUGCAC-CGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 52207 0.66 0.887748
Target:  5'- -gCGACUGCGCGc-CGU-GCAAACUg -3'
miRNA:   3'- ugGCUGGCGCGCauGCAcCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 126326 0.66 0.887748
Target:  5'- gGCCGGCguaaacugCGCGCGUGCGccGGUcguGCUg -3'
miRNA:   3'- -UGGCUG--------GCGCGCAUGCa-CCGuu-UGAa -5'
6853 3' -55.7 NC_001875.2 + 30200 0.66 0.887748
Target:  5'- cGCCGuucGCCGCGaCGgccguUGUGGCGAccACUUu -3'
miRNA:   3'- -UGGC---UGGCGC-GCau---GCACCGUU--UGAA- -5'
6853 3' -55.7 NC_001875.2 + 33048 0.66 0.887052
Target:  5'- cGCCGcGCCGCGCGgauaGCGUuccgcgcGGCuccAGACUUu -3'
miRNA:   3'- -UGGC-UGGCGCGCa---UGCA-------CCG---UUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 10634 0.66 0.880677
Target:  5'- gGCCGguGCCGCccaGCGUGCaGUacuugggcGGCGGACUg -3'
miRNA:   3'- -UGGC--UGGCG---CGCAUG-CA--------CCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 50547 0.66 0.873377
Target:  5'- cGCCGGCgGCGCGcgugucuuuUGCGgGGCAuuCg- -3'
miRNA:   3'- -UGGCUGgCGCGC---------AUGCaCCGUuuGaa -5'
6853 3' -55.7 NC_001875.2 + 110583 0.66 0.873377
Target:  5'- aGCCGcGCCGCGCGcGCGccUGGaCcAGCUUc -3'
miRNA:   3'- -UGGC-UGGCGCGCaUGC--ACC-GuUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 29782 0.66 0.873377
Target:  5'- -aCGGCCGCGgGUggacggGCGUGuCAGGCUa -3'
miRNA:   3'- ugGCUGGCGCgCA------UGCACcGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 58068 0.66 0.873377
Target:  5'- cGCUGACCGCGCuGUcgGCGgucUGGCGcguGCg- -3'
miRNA:   3'- -UGGCUGGCGCG-CA--UGC---ACCGUu--UGaa -5'
6853 3' -55.7 NC_001875.2 + 90040 0.66 0.873377
Target:  5'- cGCCGG-CGCGCGUGCc-GGCGGAa-- -3'
miRNA:   3'- -UGGCUgGCGCGCAUGcaCCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 114958 0.66 0.87189
Target:  5'- cGCCG-CUGCGCGUACGcauacaaccaggGGCGuACa- -3'
miRNA:   3'- -UGGCuGGCGCGCAUGCa-----------CCGUuUGaa -5'
6853 3' -55.7 NC_001875.2 + 35523 0.66 0.865853
Target:  5'- -gCGGCCGCGCGUuauauACGcGGCuuAUUg -3'
miRNA:   3'- ugGCUGGCGCGCA-----UGCaCCGuuUGAa -5'
6853 3' -55.7 NC_001875.2 + 128012 0.66 0.865853
Target:  5'- -gCGGCCGCGCcgGCGUGcGCcGACg- -3'
miRNA:   3'- ugGCUGGCGCGcaUGCAC-CGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 122138 0.66 0.865853
Target:  5'- gGCgCGGCCgGCGCGcACGacGGCGAGCc- -3'
miRNA:   3'- -UG-GCUGG-CGCGCaUGCa-CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 31257 0.66 0.85811
Target:  5'- cCCGGCC-CGCGUACGcgucgacGCAGACg- -3'
miRNA:   3'- uGGCUGGcGCGCAUGCac-----CGUUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.