miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 39163 0.66 0.86548
Target:  5'- uGGgGCCgCGAGGcgggccGGCgguugcguggcguuuACGGUgCGCCGCUa -3'
miRNA:   3'- -CCgUGG-GCUUU------UCG---------------UGCCA-GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 81980 0.66 0.862463
Target:  5'- uGGCGCCgGcAAGGCGCgccGGcCGgCGCg -3'
miRNA:   3'- -CCGUGGgCuUUUCGUG---CCaGCgGCGa -5'
6858 3' -57 NC_001875.2 + 88521 0.66 0.862463
Target:  5'- cGGCAaccacgCCGAcccGCGCGcG-CGCCGCUa -3'
miRNA:   3'- -CCGUg-----GGCUuuuCGUGC-CaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 7020 0.66 0.862463
Target:  5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3'
miRNA:   3'- cCGugGGCUU---UUCGUgCCAgCGGCGa -5'
6858 3' -57 NC_001875.2 + 42335 0.66 0.862463
Target:  5'- cGGC-CCCaGGcgGAAGCGCaGUCGCaGCg -3'
miRNA:   3'- -CCGuGGG-CU--UUUCGUGcCAGCGgCGa -5'
6858 3' -57 NC_001875.2 + 82375 0.66 0.862463
Target:  5'- gGGCGCgCGcGGAAcCACGG-CGCCGUc -3'
miRNA:   3'- -CCGUGgGC-UUUUcGUGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 83868 0.66 0.862463
Target:  5'- cGC-CCCGcuc-GCACGGuuccUCGUCGCUg -3'
miRNA:   3'- cCGuGGGCuuuuCGUGCC----AGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 19189 0.66 0.862463
Target:  5'- gGGCACCgCGAuu-GCACGGaCGCa--- -3'
miRNA:   3'- -CCGUGG-GCUuuuCGUGCCaGCGgcga -5'
6858 3' -57 NC_001875.2 + 50693 0.66 0.861703
Target:  5'- aGGCGCCUGcuuugucAAAAGCGaaaaGGUCGuuGg- -3'
miRNA:   3'- -CCGUGGGC-------UUUUCGUg---CCAGCggCga -5'
6858 3' -57 NC_001875.2 + 59487 0.66 0.857875
Target:  5'- cGCGgCCGAGAcaAGCGCGucgagugccccauguGcCGCCGCa -3'
miRNA:   3'- cCGUgGGCUUU--UCGUGC---------------CaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 57738 0.66 0.854776
Target:  5'- cGCGCC-----AGCACGG-CGUCGCUg -3'
miRNA:   3'- cCGUGGgcuuuUCGUGCCaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 31808 0.66 0.854776
Target:  5'- cGGCACgaCGAA---CGCGGcaagCGCCGCg -3'
miRNA:   3'- -CCGUGg-GCUUuucGUGCCa---GCGGCGa -5'
6858 3' -57 NC_001875.2 + 90703 0.66 0.854776
Target:  5'- gGGUugCCG----GCGCGGcCGCCGg- -3'
miRNA:   3'- -CCGugGGCuuuuCGUGCCaGCGGCga -5'
6858 3' -57 NC_001875.2 + 42527 0.66 0.846889
Target:  5'- aGCGagCCGAAgcGCAUGGUgGCgGCg -3'
miRNA:   3'- cCGUg-GGCUUuuCGUGCCAgCGgCGa -5'
6858 3' -57 NC_001875.2 + 63272 0.66 0.846889
Target:  5'- cGGCGCCaCGcgguGCGCGacCGCCGCc -3'
miRNA:   3'- -CCGUGG-GCuuuuCGUGCcaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 119237 0.66 0.846889
Target:  5'- uGGCGCCaacaucAGUugGGUCuaCGCUa -3'
miRNA:   3'- -CCGUGGgcuuu-UCGugCCAGcgGCGA- -5'
6858 3' -57 NC_001875.2 + 71081 0.66 0.846889
Target:  5'- -aCACuuGAAAAGCAUGcagcuGUCGCUGUUu -3'
miRNA:   3'- ccGUGggCUUUUCGUGC-----CAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 92515 0.66 0.846889
Target:  5'- uGCGCCUGcAgcGCGCGcaCGCCGCc -3'
miRNA:   3'- cCGUGGGCuUuuCGUGCcaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 73338 0.66 0.846889
Target:  5'- cGGCGCaauuuCGAAAcgcAGCGCGGUC-UCGUUg -3'
miRNA:   3'- -CCGUGg----GCUUU---UCGUGCCAGcGGCGA- -5'
6858 3' -57 NC_001875.2 + 74322 0.66 0.838807
Target:  5'- aGGCGCCgGAc-AGCACGGgCGUCa-- -3'
miRNA:   3'- -CCGUGGgCUuuUCGUGCCaGCGGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.