miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 131524 0.67 0.822088
Target:  5'- cGGCAUCCGuuugagcGGAGCGCGGaCGaggUGCUg -3'
miRNA:   3'- -CCGUGGGCu------UUUCGUGCCaGCg--GCGA- -5'
6858 3' -57 NC_001875.2 + 130774 0.67 0.786648
Target:  5'- --aGCCUGAcc-GCGCGGUCGCCa-- -3'
miRNA:   3'- ccgUGGGCUuuuCGUGCCAGCGGcga -5'
6858 3' -57 NC_001875.2 + 130562 0.91 0.034645
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGa- -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCga -5'
6858 3' -57 NC_001875.2 + 130496 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130400 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130334 0.84 0.101632
Target:  5'- cGCACCCaAAAGGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGcUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130268 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130202 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130136 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130076 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130011 0.85 0.084447
Target:  5'- -aCACCCGAAAAGCAgGGUCGuuGCUg -3'
miRNA:   3'- ccGUGGGCUUUUCGUgCCAGCggCGA- -5'
6858 3' -57 NC_001875.2 + 129944 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 128764 0.67 0.813466
Target:  5'- uGCACgCCGu-GGGCGacccCGGcgCGCCGCUg -3'
miRNA:   3'- cCGUG-GGCuuUUCGU----GCCa-GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 128731 0.69 0.689619
Target:  5'- aGCACCUGGAccGCuagaccacuacAUGGUCGCCGa- -3'
miRNA:   3'- cCGUGGGCUUuuCG-----------UGCCAGCGGCga -5'
6858 3' -57 NC_001875.2 + 127365 0.67 0.786648
Target:  5'- uGUGCCUGAAAGcauGCGCGGaCGgCGCUc -3'
miRNA:   3'- cCGUGGGCUUUU---CGUGCCaGCgGCGA- -5'
6858 3' -57 NC_001875.2 + 125359 0.66 0.830537
Target:  5'- cGGCACuCCGc---GUugGG-CGCCGUa -3'
miRNA:   3'- -CCGUG-GGCuuuuCGugCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 119237 0.66 0.846889
Target:  5'- uGGCGCCaacaucAGUugGGUCuaCGCUa -3'
miRNA:   3'- -CCGUGGgcuuu-UCGugCCAGcgGCGA- -5'
6858 3' -57 NC_001875.2 + 118023 0.67 0.795737
Target:  5'- cGGUACCgCGAccAGUgcgACGGcaaCGCCGCg -3'
miRNA:   3'- -CCGUGG-GCUuuUCG---UGCCa--GCGGCGa -5'
6858 3' -57 NC_001875.2 + 116242 0.67 0.799332
Target:  5'- cGCACCaCGGGAAGCGCcuccauGGgaacauacuggcgaCGCCGCa -3'
miRNA:   3'- cCGUGG-GCUUUUCGUG------CCa-------------GCGGCGa -5'
6858 3' -57 NC_001875.2 + 115909 0.68 0.768061
Target:  5'- uGGCGCCCcgccAGCugGGUCauguuGCCGgUg -3'
miRNA:   3'- -CCGUGGGcuuuUCGugCCAG-----CGGCgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.