miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 17157 1.1 0.0018
Target:  5'- uGGCACCCGAAAAGCACGGUCGCCGCUg -3'
miRNA:   3'- -CCGUGGGCUUUUCGUGCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 21683 0.7 0.617273
Target:  5'- cGcCGCCCGAcGAGCgcgacgcggugcuGCGGUCcaGCCGCa -3'
miRNA:   3'- cC-GUGGGCUuUUCG-------------UGCCAG--CGGCGa -5'
6858 3' -57 NC_001875.2 + 24014 0.7 0.638741
Target:  5'- aGGCGCaCCGGGcgcGGGCucgGCGGUCGCgugGCUg -3'
miRNA:   3'- -CCGUG-GGCUU---UUCG---UGCCAGCGg--CGA- -5'
6858 3' -57 NC_001875.2 + 88521 0.66 0.862463
Target:  5'- cGGCAaccacgCCGAcccGCGCGcG-CGCCGCUa -3'
miRNA:   3'- -CCGUg-----GGCUuuuCGUGC-CaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 33545 0.74 0.415657
Target:  5'- aGCACgCGuuGgccacAGUGCGGUCGCCGCg -3'
miRNA:   3'- cCGUGgGCuuU-----UCGUGCCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 77261 0.74 0.415657
Target:  5'- gGGCGCgCCGccGGGCgaaGCGGcCGCCGCg -3'
miRNA:   3'- -CCGUG-GGCuuUUCG---UGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 9727 0.73 0.47934
Target:  5'- cGCGCCCGAAGcguGGCACGuGUugagcguccacCGCCGUUc -3'
miRNA:   3'- cCGUGGGCUUU---UCGUGC-CA-----------GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 79690 0.72 0.488829
Target:  5'- aGGCACUCGAGgucgaugagcGAGUugGGcCGCgGCa -3'
miRNA:   3'- -CCGUGGGCUU----------UUCGugCCaGCGgCGa -5'
6858 3' -57 NC_001875.2 + 87848 0.71 0.547438
Target:  5'- cGGCGCCCGucGGGCuguccgugGCGGUCGgCGa- -3'
miRNA:   3'- -CCGUGGGCuuUUCG--------UGCCAGCgGCga -5'
6858 3' -57 NC_001875.2 + 89082 0.7 0.612167
Target:  5'- cGGCcgACCCGA---GCGCGccgcucaccaugcgcGUCGCCGCg -3'
miRNA:   3'- -CCG--UGGGCUuuuCGUGC---------------CAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 61633 0.71 0.56749
Target:  5'- cGGCGCCUc--GGGCGCccaguGGUCGCCGUc -3'
miRNA:   3'- -CCGUGGGcuuUUCGUG-----CCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 36147 0.72 0.531559
Target:  5'- cGCGCCCGAGccGUAgauugcgcauuaaacCGGUUGCCGUg -3'
miRNA:   3'- cCGUGGGCUUuuCGU---------------GCCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 17092 1.01 0.007009
Target:  5'- cGCACCCGAAAAGCACGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUGCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 79312 0.71 0.597891
Target:  5'- uGGCGCgugcuuUCGAuGAGCGCGG-CGCUGCc -3'
miRNA:   3'- -CCGUG------GGCUuUUCGUGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 94710 0.74 0.397584
Target:  5'- cGCACgCGGAAagacgcaaacgccGGCGCGG-CGCCGCg -3'
miRNA:   3'- cCGUGgGCUUU-------------UCGUGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 115582 0.72 0.495524
Target:  5'- gGGCACCaCGuGAcGCACGcgcgugacggccucGUCGCCGCa -3'
miRNA:   3'- -CCGUGG-GCuUUuCGUGC--------------CAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 82198 0.7 0.608084
Target:  5'- gGGCGCCgGcGGccGCuCGuGUCGCCGCUg -3'
miRNA:   3'- -CCGUGGgC-UUuuCGuGC-CAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 31252 0.7 0.628516
Target:  5'- cGGCGCCCGGcccgcGUACGcGUCGaCGCa -3'
miRNA:   3'- -CCGUGGGCUuuu--CGUGC-CAGCgGCGa -5'
6858 3' -57 NC_001875.2 + 102569 0.74 0.406988
Target:  5'- cGCGCCCcgccGGCGCGGUCggcgGCCGCg -3'
miRNA:   3'- cCGUGGGcuuuUCGUGCCAG----CGGCGa -5'
6858 3' -57 NC_001875.2 + 78457 0.74 0.415657
Target:  5'- uGCGCCCGcAAAAGCGCucgcugCGCCGCa -3'
miRNA:   3'- cCGUGGGC-UUUUCGUGcca---GCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.