miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 131757 0.68 0.590913
Target:  5'- -gGCGGCGgaUCGGg--CGGCGCGucauuggugucguuCGCCg -3'
miRNA:   3'- ugUGCCGC--GGCCaaaGCCGCGU--------------GCGG- -5'
6860 5' -60.1 NC_001875.2 + 131511 0.75 0.241291
Target:  5'- -uGCGGCGCgCGGUgcagCGGCuggaagcggcgcaaaGCGCGCCc -3'
miRNA:   3'- ugUGCCGCG-GCCAaa--GCCG---------------CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 130921 0.69 0.532131
Target:  5'- gACGCGGCccugcagucguuaaGCCGGUUcgUGGCcGacuGCGCCg -3'
miRNA:   3'- -UGUGCCG--------------CGGCCAAa-GCCG-Cg--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 130597 0.71 0.416202
Target:  5'- aACACuguuuaaauuGCGCCGGgcgUCGGgauccUGCACGCCg -3'
miRNA:   3'- -UGUGc---------CGCGGCCaa-AGCC-----GCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 130112 0.7 0.496932
Target:  5'- -gGCGGCGgCGGcgcgacCGGUGuCGCGCCc -3'
miRNA:   3'- ugUGCCGCgGCCaaa---GCCGC-GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 130058 0.68 0.613789
Target:  5'- -aAUGGCGgCGGcggCGGCGgCAUGCUc -3'
miRNA:   3'- ugUGCCGCgGCCaaaGCCGC-GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 129971 0.71 0.407732
Target:  5'- -gGCGGCGgCGGcggCGGCGgCAUGCUc -3'
miRNA:   3'- ugUGCCGCgGCCaaaGCCGC-GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 129544 0.7 0.496932
Target:  5'- -aGCuGCGCgCGGccaCGGCGCGCGCg -3'
miRNA:   3'- ugUGcCGCG-GCCaaaGCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 129166 0.68 0.59389
Target:  5'- ---aGGCGCCGcaGUUgccccaGGCGC-CGCCg -3'
miRNA:   3'- ugugCCGCGGC--CAAag----CCGCGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 128741 0.67 0.643718
Target:  5'- cGCGCGagccGCGCCccgg-CGcGUGCACGCCg -3'
miRNA:   3'- -UGUGC----CGCGGccaaaGC-CGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 128669 0.68 0.59389
Target:  5'- uGCGCGGcCGCCGGcucaccuacUCGcCGCccgACGCCg -3'
miRNA:   3'- -UGUGCC-GCGGCCaa-------AGCcGCG---UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 128302 0.78 0.154333
Target:  5'- cCACGGCGCCGGUgaCGuGCGCcaaauGCGCa -3'
miRNA:   3'- uGUGCCGCGGCCAaaGC-CGCG-----UGCGg -5'
6860 5' -60.1 NC_001875.2 + 127385 0.68 0.587938
Target:  5'- -gACGGCGCUcagagccuGGccaaagugcuggCGGCGCGCGUCa -3'
miRNA:   3'- ugUGCCGCGG--------CCaaa---------GCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 126320 0.71 0.416202
Target:  5'- -aACGGCgGCCGGcguaaacugCGcGCGUGCGCCg -3'
miRNA:   3'- ugUGCCG-CGGCCaaa------GC-CGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 125942 0.67 0.683465
Target:  5'- uGC-CGGCGCUguacgacuacauGG-UUCGGCGCAuCGgCg -3'
miRNA:   3'- -UGuGCCGCGG------------CCaAAGCCGCGU-GCgG- -5'
6860 5' -60.1 NC_001875.2 + 125137 0.69 0.535026
Target:  5'- -gGCGGgGCaUGGUguacaaaUGGCGUGCGCCg -3'
miRNA:   3'- ugUGCCgCG-GCCAaa-----GCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 124899 0.66 0.732176
Target:  5'- ---aGGCGCgGGUUUUGuuguaGCGCGCGguCCa -3'
miRNA:   3'- ugugCCGCGgCCAAAGC-----CGCGUGC--GG- -5'
6860 5' -60.1 NC_001875.2 + 124881 0.69 0.544714
Target:  5'- aGCAgcGCGCCGuGgcgaugucgCGGCGCACGCa -3'
miRNA:   3'- -UGUgcCGCGGC-Caaa------GCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 124725 0.73 0.336567
Target:  5'- -aGCGGCGCguggCGGUcaaugUCGGCaGCGCGCg -3'
miRNA:   3'- ugUGCCGCG----GCCAa----AGCCG-CGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 123340 0.7 0.506346
Target:  5'- uGCGCGGCGCCcacacGGa--CGGCGCcCGgCg -3'
miRNA:   3'- -UGUGCCGCGG-----CCaaaGCCGCGuGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.