miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 16080 1.11 0.0008
Target:  5'- cACACGGCGCCGGUUUCGGCGCACGCCg -3'
miRNA:   3'- -UGUGCCGCGGCCAAAGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 3154 0.75 0.262482
Target:  5'- gACGCGGCGUCGGg--CGGCGaguaggugaGCCg -3'
miRNA:   3'- -UGUGCCGCGGCCaaaGCCGCgug------CGG- -5'
6860 5' -60.1 NC_001875.2 + 18616 0.74 0.281277
Target:  5'- aACACGGCGCUGaUUcCGGCGCucaaACGCa -3'
miRNA:   3'- -UGUGCCGCGGCcAAaGCCGCG----UGCGg -5'
6860 5' -60.1 NC_001875.2 + 40648 0.66 0.741704
Target:  5'- gGCGCGcacGCGCCGGcuguugcgCGGCGaCAUuCCg -3'
miRNA:   3'- -UGUGC---CGCGGCCaaa-----GCCGC-GUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 111187 0.8 0.116957
Target:  5'- cUugGGCGCgcUGGg--CGGCGCGCGCCg -3'
miRNA:   3'- uGugCCGCG--GCCaaaGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 65790 0.8 0.125901
Target:  5'- cGCGCGGCGUCGGcgcgCGGUGCcugcgcgGCGCCa -3'
miRNA:   3'- -UGUGCCGCGGCCaaa-GCCGCG-------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 128302 0.78 0.154333
Target:  5'- cCACGGCGCCGGUgaCGuGCGCcaaauGCGCa -3'
miRNA:   3'- uGUGCCGCGGCCAaaGC-CGCG-----UGCGg -5'
6860 5' -60.1 NC_001875.2 + 79330 0.78 0.154333
Target:  5'- aGCGCGGCGCUGccUUUGGCGC-CGCUg -3'
miRNA:   3'- -UGUGCCGCGGCcaAAGCCGCGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 63443 0.77 0.192639
Target:  5'- cACGucCGGCGUCGGUUugUCGGCGUugGUg -3'
miRNA:   3'- -UGU--GCCGCGGCCAA--AGCCGCGugCGg -5'
6860 5' -60.1 NC_001875.2 + 9136 0.75 0.250528
Target:  5'- gACuCGcGCGCCaguucGGUguccaCGGCGCACGCCa -3'
miRNA:   3'- -UGuGC-CGCGG-----CCAaa---GCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 120743 0.76 0.217349
Target:  5'- -uGCGGCGCCGagacggggccGUgUCcagGGCGCGCGCCa -3'
miRNA:   3'- ugUGCCGCGGC----------CAaAG---CCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 2663 0.77 0.191237
Target:  5'- -uGCGGCGCCGG---CGGCGCcuggggcaacugcgGCGCCu -3'
miRNA:   3'- ugUGCCGCGGCCaaaGCCGCG--------------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 41451 0.92 0.018451
Target:  5'- cGCACaGGCGCCGGUUgCGGCGCGCGCg -3'
miRNA:   3'- -UGUG-CCGCGGCCAAaGCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 83877 0.76 0.221017
Target:  5'- cGCACGGUuccucgucgcugcuGUCGGUgUCcGCGCACGCCu -3'
miRNA:   3'- -UGUGCCG--------------CGGCCAaAGcCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 98922 0.83 0.081559
Target:  5'- uCGCGGCGCCGGUUgcgCGuGCGCgACGCg -3'
miRNA:   3'- uGUGCCGCGGCCAAa--GC-CGCG-UGCGg -5'
6860 5' -60.1 NC_001875.2 + 93530 0.78 0.174677
Target:  5'- uGCAUGcCGCCGGccuugUCGGCGCuCGCCa -3'
miRNA:   3'- -UGUGCcGCGGCCaa---AGCCGCGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 94712 0.76 0.22797
Target:  5'- cACGCGGaaagacgcaaaCGCCGGcg-CGGCGCcGCGCCc -3'
miRNA:   3'- -UGUGCC-----------GCGGCCaaaGCCGCG-UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 73795 0.75 0.262482
Target:  5'- -gGCGGCgGCUGGaa-CGGCaGCGCGCCg -3'
miRNA:   3'- ugUGCCG-CGGCCaaaGCCG-CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 21955 0.81 0.108331
Target:  5'- uCGCGGCGCgGGgaugggCGGCGCcaGCGCCa -3'
miRNA:   3'- uGUGCCGCGgCCaaa---GCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 61208 0.79 0.135475
Target:  5'- aACGCGGCGCCGucguacaaaugUUCGGgGCAgGCCa -3'
miRNA:   3'- -UGUGCCGCGGCca---------AAGCCgCGUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.