miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 3' -55.4 NC_001875.2 + 53536 0.66 0.905479
Target:  5'- cGUCGUGCGCuaccagcgcgaGCCGCAAacGGGcuUGGUg -3'
miRNA:   3'- aCGGCGCGCG-----------UGGUGUU--UCUacACCG- -5'
6866 3' -55.4 NC_001875.2 + 15260 0.66 0.905479
Target:  5'- --aCGCuGCGCACCACcGGcGgcGUGGUg -3'
miRNA:   3'- acgGCG-CGCGUGGUGuUU-CuaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 9007 0.66 0.905479
Target:  5'- cGUCGCgGCGCACCAaauccGA-GUGuGCa -3'
miRNA:   3'- aCGGCG-CGCGUGGUguuu-CUaCAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 95879 0.66 0.905479
Target:  5'- cGCCGCGC-UugCACAAGaAUGUcGuGCa -3'
miRNA:   3'- aCGGCGCGcGugGUGUUUcUACA-C-CG- -5'
6866 3' -55.4 NC_001875.2 + 115079 0.66 0.905479
Target:  5'- cGCgGCGCGCAgUCACGAcGccG-GGCu -3'
miRNA:   3'- aCGgCGCGCGU-GGUGUUuCuaCaCCG- -5'
6866 3' -55.4 NC_001875.2 + 63133 0.66 0.905479
Target:  5'- gGCCGgGCGCGCggccggCGCAcGGGUccacgGGCa -3'
miRNA:   3'- aCGGCgCGCGUG------GUGUuUCUAca---CCG- -5'
6866 3' -55.4 NC_001875.2 + 46378 0.66 0.905479
Target:  5'- aGCUGCuGCGCAUgugcagcgaCACGGuguccgacguGGAUGUGGa -3'
miRNA:   3'- aCGGCG-CGCGUG---------GUGUU----------UCUACACCg -5'
6866 3' -55.4 NC_001875.2 + 43130 0.66 0.905479
Target:  5'- cGgCGCGCauGCGCC-CAAAGuuuuUGGCg -3'
miRNA:   3'- aCgGCGCG--CGUGGuGUUUCuac-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 94741 0.66 0.905479
Target:  5'- cGCCGCGCccGCAcacCCACGcGGcgGUGuCg -3'
miRNA:   3'- aCGGCGCG--CGU---GGUGUuUCuaCACcG- -5'
6866 3' -55.4 NC_001875.2 + 10875 0.66 0.904845
Target:  5'- gGCCGCgucggugGCGCuGCCGCGcAAcGUGuUGGCg -3'
miRNA:   3'- aCGGCG-------CGCG-UGGUGU-UUcUAC-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 7042 0.66 0.899032
Target:  5'- gGCCGCGCGCuugucgGCCugGuuccGcUGcGGCg -3'
miRNA:   3'- aCGGCGCGCG------UGGugUuu--CuACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 96418 0.66 0.899032
Target:  5'- aGUCGCGCGCAaacUCGCGcu--UGUcGGCg -3'
miRNA:   3'- aCGGCGCGCGU---GGUGUuucuACA-CCG- -5'
6866 3' -55.4 NC_001875.2 + 15080 0.66 0.899032
Target:  5'- uUGCaCGCGCaGCGCCugGuuGA---GGCg -3'
miRNA:   3'- -ACG-GCGCG-CGUGGugUuuCUacaCCG- -5'
6866 3' -55.4 NC_001875.2 + 86243 0.66 0.899032
Target:  5'- gUGCUGCGCGCcggagucgggcCCGCu-GGAcuUGGCg -3'
miRNA:   3'- -ACGGCGCGCGu----------GGUGuuUCUacACCG- -5'
6866 3' -55.4 NC_001875.2 + 23999 0.66 0.899032
Target:  5'- -cUCGCGCGCGUCGCAAGGcgcaccgGGCg -3'
miRNA:   3'- acGGCGCGCGUGGUGUUUCuaca---CCG- -5'
6866 3' -55.4 NC_001875.2 + 27176 0.66 0.899032
Target:  5'- aGCUGCGacuaaGCACCGuCAg----GUGGCa -3'
miRNA:   3'- aCGGCGCg----CGUGGU-GUuucuaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 31959 0.66 0.899032
Target:  5'- cUGCCG-GCG-ACgACGAAcgcGUGUGGCg -3'
miRNA:   3'- -ACGGCgCGCgUGgUGUUUc--UACACCG- -5'
6866 3' -55.4 NC_001875.2 + 1885 0.66 0.899032
Target:  5'- cGCCGcCGC-CGCCGCcaaugguAGAUuUGGCc -3'
miRNA:   3'- aCGGC-GCGcGUGGUGuu-----UCUAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 9129 0.66 0.899032
Target:  5'- cGCCGUggacucGCGCGCCAguucGGUGUccacGGCg -3'
miRNA:   3'- aCGGCG------CGCGUGGUguuuCUACA----CCG- -5'
6866 3' -55.4 NC_001875.2 + 38075 0.66 0.899032
Target:  5'- cUGCCGCcCGUuCgACAAcguGGGugUGUGGCg -3'
miRNA:   3'- -ACGGCGcGCGuGgUGUU---UCU--ACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.