miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6878 5' -49.2 NC_001875.2 + 47904 0.66 0.996862
Target:  5'- -uUCGCGCGgugguGCUGCCGCAg------- -3'
miRNA:   3'- gcAGCGUGU-----UGACGGCGUgauauaau -5'
6878 5' -49.2 NC_001875.2 + 103063 0.66 0.996862
Target:  5'- uCGUCGCACAguuUGaCGCGC-AUGUUAa -3'
miRNA:   3'- -GCAGCGUGUug-ACgGCGUGaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 44749 0.66 0.996862
Target:  5'- uGUUGCuGCAAUUGUCGUGCUGg---- -3'
miRNA:   3'- gCAGCG-UGUUGACGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 111931 0.66 0.996862
Target:  5'- ---gGUGCAGCUGCCGUACg------ -3'
miRNA:   3'- gcagCGUGUUGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 113172 0.66 0.996862
Target:  5'- -uUCGCcCAGCaGCCGCACcGUGa-- -3'
miRNA:   3'- gcAGCGuGUUGaCGGCGUGaUAUaau -5'
6878 5' -49.2 NC_001875.2 + 66934 0.66 0.996284
Target:  5'- uCGUCGuCGCu-CUGCgCGCGCUugAUUAu -3'
miRNA:   3'- -GCAGC-GUGuuGACG-GCGUGAuaUAAU- -5'
6878 5' -49.2 NC_001875.2 + 21549 0.66 0.996284
Target:  5'- --aCGCACGcuuaccGCggGCCGCGCgAUAUUAg -3'
miRNA:   3'- gcaGCGUGU------UGa-CGGCGUGaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 63499 0.66 0.99562
Target:  5'- uCGUC-CACaAACUGCCcGCGCaAUAUUu -3'
miRNA:   3'- -GCAGcGUG-UUGACGG-CGUGaUAUAAu -5'
6878 5' -49.2 NC_001875.2 + 20974 0.66 0.99562
Target:  5'- gCGUCGCaaugcccgcagcGCAACUGCcCGUACg------ -3'
miRNA:   3'- -GCAGCG------------UGUUGACG-GCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 64894 0.66 0.99562
Target:  5'- uCGUCGacgcuCAGCUGUCGCGCcucGUUGa -3'
miRNA:   3'- -GCAGCgu---GUUGACGGCGUGauaUAAU- -5'
6878 5' -49.2 NC_001875.2 + 86214 0.66 0.994863
Target:  5'- cCGcCGCACAACuUGCgGCug-GUGUUGg -3'
miRNA:   3'- -GCaGCGUGUUG-ACGgCGugaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 77363 0.66 0.994863
Target:  5'- gGUCaaGCGCGAagucCUGCCGCACa------ -3'
miRNA:   3'- gCAG--CGUGUU----GACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 57720 0.66 0.994863
Target:  5'- uCGUCGCGCGACaccgcaaaGUCGCGCg------ -3'
miRNA:   3'- -GCAGCGUGUUGa-------CGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 118823 0.66 0.994863
Target:  5'- -uUUGCAaAGCUGCCGCGCg------ -3'
miRNA:   3'- gcAGCGUgUUGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 121396 0.66 0.994863
Target:  5'- cCGcCGCGCcgcgucaaAGCUGCUGCGCcaaAUGUUGg -3'
miRNA:   3'- -GCaGCGUG--------UUGACGGCGUGa--UAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 54158 0.66 0.994782
Target:  5'- aGUCGCGCAaauacgcgcucggACaGCgGCGCUGcGUUGg -3'
miRNA:   3'- gCAGCGUGU-------------UGaCGgCGUGAUaUAAU- -5'
6878 5' -49.2 NC_001875.2 + 80246 0.66 0.99436
Target:  5'- gGUCGCACaAGCUguuaaacguggccacGCCGCGCg------ -3'
miRNA:   3'- gCAGCGUG-UUGA---------------CGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 51928 0.66 0.994003
Target:  5'- cCGcUGCACAGCgUGCgGCGCUAc---- -3'
miRNA:   3'- -GCaGCGUGUUG-ACGgCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 124458 0.66 0.994003
Target:  5'- gCGUCGCGCAACcgcgugGCCgauccggcggGCACUGc---- -3'
miRNA:   3'- -GCAGCGUGUUGa-----CGG----------CGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 18285 0.66 0.994003
Target:  5'- gGUCGCACAAg-GCCGCuucgcGCgcuUAUUGg -3'
miRNA:   3'- gCAGCGUGUUgaCGGCG-----UGau-AUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.