miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 3' -65.3 NC_001875.2 + 16756 0.66 0.523625
Target:  5'- uGACAgcCCGGcgUCGUGaCUGCgCGCCGCg- -3'
miRNA:   3'- gCUGU--GGCC--AGCGC-GGCG-GCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 82966 0.66 0.523625
Target:  5'- gGACACaacacuacGUUuuccucgcgGCGCCGCuCGUCGCCGg -3'
miRNA:   3'- gCUGUGgc------CAG---------CGCGGCG-GCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 58151 0.66 0.523625
Target:  5'- aGcCGCCGca-GCaGCCGCCGCagcaGCCGc -3'
miRNA:   3'- gCuGUGGCcagCG-CGGCGGCGg---CGGC- -5'
6881 3' -65.3 NC_001875.2 + 49377 0.66 0.523625
Target:  5'- gCGGCGgCGGUacCGUuCCuGCCGCCGCg- -3'
miRNA:   3'- -GCUGUgGCCA--GCGcGG-CGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 122786 0.66 0.523625
Target:  5'- gGAaACCGG-CGCGgaaaCCGgCGCgGCCGg -3'
miRNA:   3'- gCUgUGGCCaGCGC----GGCgGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 49957 0.66 0.523625
Target:  5'- uCGGaGCUGcG-CGCGCUGCUGUCGCUGc -3'
miRNA:   3'- -GCUgUGGC-CaGCGCGGCGGCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 59416 0.66 0.523625
Target:  5'- aCGAaGCCaGG-CGCGCCGuuGCCGa-- -3'
miRNA:   3'- -GCUgUGG-CCaGCGCGGCggCGGCggc -5'
6881 3' -65.3 NC_001875.2 + 126344 0.66 0.514458
Target:  5'- gCGuGCGCCGGUCGUGCUG-UGCa-CCGa -3'
miRNA:   3'- -GC-UGUGGCCAGCGCGGCgGCGgcGGC- -5'
6881 3' -65.3 NC_001875.2 + 910 0.66 0.514458
Target:  5'- -aACACaCGG-CGCaaaCCGCCGCCacuGCCGu -3'
miRNA:   3'- gcUGUG-GCCaGCGc--GGCGGCGG---CGGC- -5'
6881 3' -65.3 NC_001875.2 + 6484 0.66 0.514458
Target:  5'- aCGGCGCCcaacgcGGagugcCGCGCCaacacgcugGCCGCCGUCc -3'
miRNA:   3'- -GCUGUGG------CCa----GCGCGG---------CGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 50149 0.66 0.514458
Target:  5'- -aGCGCCuGG-CGCGCCuucugcaugGCCGCCucuucgucGCCGg -3'
miRNA:   3'- gcUGUGG-CCaGCGCGG---------CGGCGG--------CGGC- -5'
6881 3' -65.3 NC_001875.2 + 108662 0.66 0.514458
Target:  5'- cCGcCAaCGGcCGUGcCCGCaGCCGCCGu -3'
miRNA:   3'- -GCuGUgGCCaGCGC-GGCGgCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 100800 0.66 0.514458
Target:  5'- cCGACguaCGGcCGCGCCGgguCgGCCGCUu -3'
miRNA:   3'- -GCUGug-GCCaGCGCGGC---GgCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 36487 0.66 0.514458
Target:  5'- --cCGCCGacgCGUGCaCGUgCGCCGCCGg -3'
miRNA:   3'- gcuGUGGCca-GCGCG-GCG-GCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 105027 0.66 0.514458
Target:  5'- aCGACACCGaGUUGUucaugagguuGCCGauaaGCCGCuCGu -3'
miRNA:   3'- -GCUGUGGC-CAGCG----------CGGCgg--CGGCG-GC- -5'
6881 3' -65.3 NC_001875.2 + 45718 0.66 0.514458
Target:  5'- gCGACGaaGGgUGCuCCGCCGCCgaGCUGg -3'
miRNA:   3'- -GCUGUggCCaGCGcGGCGGCGG--CGGC- -5'
6881 3' -65.3 NC_001875.2 + 114946 0.66 0.514458
Target:  5'- gCGACAUCGcg-GCGCCGCUGCgCGUa- -3'
miRNA:   3'- -GCUGUGGCcagCGCGGCGGCG-GCGgc -5'
6881 3' -65.3 NC_001875.2 + 93144 0.66 0.514458
Target:  5'- uGcCGCCGGUCagguucaGCCcCaCGCCGCCGc -3'
miRNA:   3'- gCuGUGGCCAGcg-----CGGcG-GCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 119944 0.66 0.51172
Target:  5'- uCGcCGCCGuUCGCGCacaacucuaacacgCGCUGCCGCa- -3'
miRNA:   3'- -GCuGUGGCcAGCGCG--------------GCGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 5792 0.66 0.51172
Target:  5'- aCGGCauuuGCCGGcUGCGCauaagguaguagacUGCCagcGCCGCCGa -3'
miRNA:   3'- -GCUG----UGGCCaGCGCG--------------GCGG---CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.