miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 5' -54.5 NC_001875.2 + 25814 0.66 0.931704
Target:  5'- uCUCG-GCGcccgCCGA-GCACUGCAACGc -3'
miRNA:   3'- -GGGCaCGCa---GGUUaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 39011 0.66 0.931704
Target:  5'- aUUGUGCGcCUuacuGAUGCgACCGCGGCGc -3'
miRNA:   3'- gGGCACGCaGG----UUACG-UGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 50177 0.66 0.931704
Target:  5'- -aCGUGCGUCCc--GUACaGCAGCGu -3'
miRNA:   3'- ggGCACGCAGGuuaCGUGgCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 100886 0.66 0.926344
Target:  5'- aCgCGUaaGCcgGUCCGG-GCGCCGCAGCGc -3'
miRNA:   3'- -GgGCA--CG--CAGGUUaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 49644 0.66 0.926344
Target:  5'- cCCCGUGUacucgCCGuacUGC-CCGCGGCGGu -3'
miRNA:   3'- -GGGCACGca---GGUu--ACGuGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 5917 0.66 0.926344
Target:  5'- gCCGgcaugGCGUUgGGUaGCGCCGC-GCAGg -3'
miRNA:   3'- gGGCa----CGCAGgUUA-CGUGGCGuUGUU- -5'
6885 5' -54.5 NC_001875.2 + 87066 0.66 0.926344
Target:  5'- gCgGUGC-UCCAgaccGUGCACCGCGuuGAa -3'
miRNA:   3'- gGgCACGcAGGU----UACGUGGCGUugUU- -5'
6885 5' -54.5 NC_001875.2 + 72249 0.66 0.923007
Target:  5'- gCCCGUGCucgcgcacgucggCCAcgcUGCAgCGCAACAc -3'
miRNA:   3'- -GGGCACGca-----------GGUu--ACGUgGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 77849 0.66 0.920732
Target:  5'- gCCGUGCGcgaCCA--GCugCGgCAACAAa -3'
miRNA:   3'- gGGCACGCa--GGUuaCGugGC-GUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 70213 0.66 0.914869
Target:  5'- aCUGgGCGcCCGAgGCGCCGcCGACAc -3'
miRNA:   3'- gGGCaCGCaGGUUaCGUGGC-GUUGUu -5'
6885 5' -54.5 NC_001875.2 + 68706 0.66 0.914869
Target:  5'- aCCCGUGCG-CCGGccgcGCGCC-CGGCc- -3'
miRNA:   3'- -GGGCACGCaGGUUa---CGUGGcGUUGuu -5'
6885 5' -54.5 NC_001875.2 + 95385 0.66 0.914869
Target:  5'- -gCGUcGUGUCCAAUucgaGCCGCAGCGc -3'
miRNA:   3'- ggGCA-CGCAGGUUAcg--UGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 86953 0.66 0.914869
Target:  5'- gCCGccaGCGUCCAA-GCGgCGCAaagcGCAAa -3'
miRNA:   3'- gGGCa--CGCAGGUUaCGUgGCGU----UGUU- -5'
6885 5' -54.5 NC_001875.2 + 118020 0.66 0.902393
Target:  5'- uUCCGguaccGCGaCCAGUGCgACgGCAACGc -3'
miRNA:   3'- -GGGCa----CGCaGGUUACG-UGgCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 124480 0.67 0.895785
Target:  5'- aUCCG-GCGggCAcUGCACCGCAggcuACAAg -3'
miRNA:   3'- -GGGCaCGCagGUuACGUGGCGU----UGUU- -5'
6885 5' -54.5 NC_001875.2 + 113493 0.67 0.895785
Target:  5'- gCCGUugGCGUCC-AUGCcgaGCUGCuGCAAa -3'
miRNA:   3'- gGGCA--CGCAGGuUACG---UGGCGuUGUU- -5'
6885 5' -54.5 NC_001875.2 + 98032 0.67 0.895785
Target:  5'- cCCCGcGCG-CC-GUGCGCCGacgGGCAAg -3'
miRNA:   3'- -GGGCaCGCaGGuUACGUGGCg--UUGUU- -5'
6885 5' -54.5 NC_001875.2 + 2231 0.67 0.881847
Target:  5'- uCCUucaCGUCCAGuUGCuGCCGCAGCAAc -3'
miRNA:   3'- -GGGcacGCAGGUU-ACG-UGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 70088 0.67 0.881847
Target:  5'- uUCCGUGCcaacGUuugaccCCuuUGCGCCGCAGCc- -3'
miRNA:   3'- -GGGCACG----CA------GGuuACGUGGCGUUGuu -5'
6885 5' -54.5 NC_001875.2 + 79626 0.67 0.874525
Target:  5'- gUCGcGCGUCCAGuuUGCACgGCGcGCAGu -3'
miRNA:   3'- gGGCaCGCAGGUU--ACGUGgCGU-UGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.