miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 3' -54.3 NC_001875.2 + 14546 0.66 0.938397
Target:  5'- gAGUGAGC-UGGCGcACG-CGGCcaucgugaaGCGCa -3'
miRNA:   3'- -UUACUUGaACCGC-UGCuGCCG---------CGUGc -5'
6886 3' -54.3 NC_001875.2 + 53508 0.66 0.938397
Target:  5'- --aGGACUcGGUGcGCGuguuuuUGGCGCACGu -3'
miRNA:   3'- uuaCUUGAaCCGC-UGCu-----GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 36437 0.66 0.938397
Target:  5'- -----cCUUuGCGACGcCGGCGCGCu -3'
miRNA:   3'- uuacuuGAAcCGCUGCuGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 105520 0.66 0.938397
Target:  5'- ----uGCUUGGCGAC-ACGGCucguCGCGa -3'
miRNA:   3'- uuacuUGAACCGCUGcUGCCGc---GUGC- -5'
6886 3' -54.3 NC_001875.2 + 91915 0.66 0.933376
Target:  5'- -uUGAAacgGGCacuccAUGGCGGCGUACGa -3'
miRNA:   3'- uuACUUgaaCCGc----UGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 111141 0.66 0.933376
Target:  5'- --cGuACgUUGGCGGCGGCuuGGUGuCACGg -3'
miRNA:   3'- uuaCuUG-AACCGCUGCUG--CCGC-GUGC- -5'
6886 3' -54.3 NC_001875.2 + 6916 0.66 0.933376
Target:  5'- cGUGcGCUcggccgagGGCGugGACcGCGCGCu -3'
miRNA:   3'- uUACuUGAa-------CCGCugCUGcCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 19063 0.66 0.933376
Target:  5'- aGGUGAACUcggacgGGCaGAUGcUGGCGUugGa -3'
miRNA:   3'- -UUACUUGAa-----CCG-CUGCuGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 100870 0.66 0.933376
Target:  5'- -uUGAGCgcgaGGCGcagcgcgcGCGugGGCGcCAUGg -3'
miRNA:   3'- uuACUUGaa--CCGC--------UGCugCCGC-GUGC- -5'
6886 3' -54.3 NC_001875.2 + 89338 0.66 0.93286
Target:  5'- ---cAGCUUugcGGCgcacgcgGACGACGGCGUGCGc -3'
miRNA:   3'- uuacUUGAA---CCG-------CUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 63725 0.66 0.928105
Target:  5'- --------cGGCGACGGCGG-GCGCu -3'
miRNA:   3'- uuacuugaaCCGCUGCUGCCgCGUGc -5'
6886 3' -54.3 NC_001875.2 + 73495 0.66 0.928105
Target:  5'- --cGAGCaUGGCGACcuguACGuGaCGCACGa -3'
miRNA:   3'- uuaCUUGaACCGCUGc---UGC-C-GCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 5969 0.66 0.927564
Target:  5'- cGUGAAUgUGGuCGcCGACGGCaggcccaGCGCGu -3'
miRNA:   3'- uUACUUGaACC-GCuGCUGCCG-------CGUGC- -5'
6886 3' -54.3 NC_001875.2 + 11978 0.66 0.922582
Target:  5'- --aGcAC-UGGCGACGGCGuuGgGCGCGg -3'
miRNA:   3'- uuaCuUGaACCGCUGCUGC--CgCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 5743 0.66 0.922582
Target:  5'- -uUGA---UGGCGACG-CGGCGCuuGc -3'
miRNA:   3'- uuACUugaACCGCUGCuGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 103313 0.66 0.922582
Target:  5'- cGAUGAccgGCgugccgGGCGACG-CGuGCGCgACGg -3'
miRNA:   3'- -UUACU---UGaa----CCGCUGCuGC-CGCG-UGC- -5'
6886 3' -54.3 NC_001875.2 + 53356 0.66 0.922582
Target:  5'- cGUGGACgacuaCGACGACGGCGUuCa -3'
miRNA:   3'- uUACUUGaacc-GCUGCUGCCGCGuGc -5'
6886 3' -54.3 NC_001875.2 + 119644 0.66 0.922582
Target:  5'- --cGGcACUUuacGGCcaggcaaaccucGGCGGCGGCGCACa -3'
miRNA:   3'- uuaCU-UGAA---CCG------------CUGCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 32363 0.66 0.922017
Target:  5'- aGAUGcacaGAUUUGGCGAUgcuuucuucaaagGGCGGCGaCGCa -3'
miRNA:   3'- -UUAC----UUGAACCGCUG-------------CUGCCGC-GUGc -5'
6886 3' -54.3 NC_001875.2 + 75491 0.66 0.916809
Target:  5'- uGGUGA---UGGCGucgGCGAUGGCGUcgGCGa -3'
miRNA:   3'- -UUACUugaACCGC---UGCUGCCGCG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.