miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 3' -54.5 NC_001875.2 + 65093 0.66 0.928266
Target:  5'- -gGACGCG-CUCAacGAgGCGGCCAAg -3'
miRNA:   3'- agUUGCGCuGGGUacUUgUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 53793 0.66 0.928266
Target:  5'- aCAACGCGGCCaa-GAACAUcaacGCCGg -3'
miRNA:   3'- aGUUGCGCUGGguaCUUGUGc---CGGUu -5'
6887 3' -54.5 NC_001875.2 + 123650 0.66 0.927724
Target:  5'- cCAAgGCGACCCcacccagcaagucAUGGAC-CGGUUAGa -3'
miRNA:   3'- aGUUgCGCUGGG-------------UACUUGuGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 47633 0.66 0.926081
Target:  5'- --cGCGCGGCCCuacuaccggcagcuGUugcgcaaacgcacGGACGCGGCCGc -3'
miRNA:   3'- aguUGCGCUGGG--------------UA-------------CUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 5995 0.66 0.922727
Target:  5'- cCAGCGCGugCCGa-AugGgGGCCAc -3'
miRNA:   3'- aGUUGCGCugGGUacUugUgCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 115837 0.66 0.922727
Target:  5'- aCcuCGCGGCCCAgcAGC-CGGUCAAa -3'
miRNA:   3'- aGuuGCGCUGGGUacUUGuGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 100587 0.66 0.922727
Target:  5'- gUCGACGCGuACgCGggccGGGCGcCGGCCGc -3'
miRNA:   3'- -AGUUGCGC-UGgGUa---CUUGU-GCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 22583 0.66 0.922727
Target:  5'- -gGGCGCGGCgCGUuGGC-CGGCCGg -3'
miRNA:   3'- agUUGCGCUGgGUAcUUGuGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 93250 0.66 0.916934
Target:  5'- cUCGACGCGcagcugGCCCGuguagagcaggaUGGGCACGccgcGCCGAc -3'
miRNA:   3'- -AGUUGCGC------UGGGU------------ACUUGUGC----CGGUU- -5'
6887 3' -54.5 NC_001875.2 + 48363 0.66 0.916934
Target:  5'- aCAGCGCGcuaaucgcgcGCCCGUccGACGCGGCg-- -3'
miRNA:   3'- aGUUGCGC----------UGGGUAc-UUGUGCCGguu -5'
6887 3' -54.5 NC_001875.2 + 35514 0.66 0.916934
Target:  5'- ---uUGCGGCCaagUAUG-ACGCGGCCAc -3'
miRNA:   3'- aguuGCGCUGG---GUACuUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 97143 0.66 0.91089
Target:  5'- cUAugGCGaACCCGUuGGgGCGGCCc- -3'
miRNA:   3'- aGUugCGC-UGGGUAcUUgUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 18046 0.66 0.91089
Target:  5'- gCAAUGCGACaugcgCGUGGcggACAacCGGCCAAg -3'
miRNA:   3'- aGUUGCGCUGg----GUACU---UGU--GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 102928 0.66 0.91089
Target:  5'- --uACGCGGCCacggucuuguUGUGGGgGCGGCCGGg -3'
miRNA:   3'- aguUGCGCUGG----------GUACUUgUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 23668 0.66 0.91089
Target:  5'- gUCAuCGCGGUCCGUGuGCACGaCCAGg -3'
miRNA:   3'- -AGUuGCGCUGGGUACuUGUGCcGGUU- -5'
6887 3' -54.5 NC_001875.2 + 96770 0.66 0.904595
Target:  5'- gUCGAUGCGGCCgCAaaccAGCACGGgCAc -3'
miRNA:   3'- -AGUUGCGCUGG-GUac--UUGUGCCgGUu -5'
6887 3' -54.5 NC_001875.2 + 52652 0.66 0.898052
Target:  5'- gCGGCGCGGacauuuaCCAc-AACACGGCCGu -3'
miRNA:   3'- aGUUGCGCUg------GGUacUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 29200 0.66 0.898052
Target:  5'- gCAACuuUGGCCaguUGAugGCGGCCAAg -3'
miRNA:   3'- aGUUGc-GCUGGgu-ACUugUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 18076 0.66 0.898052
Target:  5'- -gGGCGCGACCuCAUuAACGgCGGCUg- -3'
miRNA:   3'- agUUGCGCUGG-GUAcUUGU-GCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 99927 0.66 0.898052
Target:  5'- --cGCGCG-CgCgGUGcAGCGCGGCCAAg -3'
miRNA:   3'- aguUGCGCuG-GgUAC-UUGUGCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.