miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 5' -52.5 NC_001875.2 + 97889 0.66 0.982475
Target:  5'- cGCacgGG-CACGUUGCggGCGucGGCGCCg -3'
miRNA:   3'- -CGaa-CCaGUGCAGCG--CGCcuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 51185 0.66 0.982475
Target:  5'- aGUUUGccCACGaCgGCGCGGuucuGGCGCCg -3'
miRNA:   3'- -CGAACcaGUGCaG-CGCGCCu---UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 21938 0.66 0.982475
Target:  5'- aGCggGGcguuaaacguUCGCGgCGCGgGGAugggcGGCGCCa -3'
miRNA:   3'- -CGaaCC----------AGUGCaGCGCgCCU-----UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 48873 0.66 0.982475
Target:  5'- aGCgaggGGUCG-GUCGCcgaGGAcGCGCCc -3'
miRNA:   3'- -CGaa--CCAGUgCAGCGcg-CCUuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 34171 0.66 0.982475
Target:  5'- cGCUUuGUUcguugccgucgGCGUCGCGCauuuGCACCa -3'
miRNA:   3'- -CGAAcCAG-----------UGCAGCGCGccuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 36075 0.66 0.982273
Target:  5'- ---cGGUuccugcaacaagaCGCGcUCGCGCGGcAGCACg -3'
miRNA:   3'- cgaaCCA-------------GUGC-AGCGCGCCuUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 110048 0.66 0.981236
Target:  5'- ---aGGUUAucguuccggaacccgUGUCGCGCGcaGAGACGCUg -3'
miRNA:   3'- cgaaCCAGU---------------GCAGCGCGC--CUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 79755 0.66 0.980376
Target:  5'- cGC-UGGUgGCGagcaUGUGCGcAAACACCg -3'
miRNA:   3'- -CGaACCAgUGCa---GCGCGCcUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 36877 0.66 0.980376
Target:  5'- ----cGUCGuCGUgCGCGCGGc-ACACCg -3'
miRNA:   3'- cgaacCAGU-GCA-GCGCGCCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 103446 0.66 0.980376
Target:  5'- uGC-UGGUCugcgGCGUCGUGC----ACGCCg -3'
miRNA:   3'- -CGaACCAG----UGCAGCGCGccuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 16881 0.66 0.980376
Target:  5'- --cUGGUUguauGCGUaCGCGCaGcgGCGCCg -3'
miRNA:   3'- cgaACCAG----UGCA-GCGCGcCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 111186 0.66 0.978095
Target:  5'- uCUUGGgCGCGcUGgGCGGcgcGCGCCg -3'
miRNA:   3'- cGAACCaGUGCaGCgCGCCuu-UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 65775 0.66 0.978095
Target:  5'- gGC-UGGgcgagCACG-CGCGCGGcgucGGCGCg -3'
miRNA:   3'- -CGaACCa----GUGCaGCGCGCCu---UUGUGg -5'
6887 5' -52.5 NC_001875.2 + 87357 0.66 0.978095
Target:  5'- aGUUcGGcCugGUCGCGCcGGu-GCACg -3'
miRNA:   3'- -CGAaCCaGugCAGCGCG-CCuuUGUGg -5'
6887 5' -52.5 NC_001875.2 + 125597 0.66 0.978095
Target:  5'- cGUUUGcGUCACaGUCGaCGCGGugguACAg- -3'
miRNA:   3'- -CGAAC-CAGUG-CAGC-GCGCCuu--UGUgg -5'
6887 5' -52.5 NC_001875.2 + 126714 0.66 0.975623
Target:  5'- ---cGGcgCACGUC-CGCGGAcGugACCu -3'
miRNA:   3'- cgaaCCa-GUGCAGcGCGCCU-UugUGG- -5'
6887 5' -52.5 NC_001875.2 + 98354 0.66 0.975623
Target:  5'- cGgUUGGcgCACcccagCGCGCGGc-GCGCCa -3'
miRNA:   3'- -CgAACCa-GUGca---GCGCGCCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 82374 0.66 0.975623
Target:  5'- ---cGG--GCG-CGCGCGGAAccacgGCGCCg -3'
miRNA:   3'- cgaaCCagUGCaGCGCGCCUU-----UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 88886 0.66 0.975623
Target:  5'- -gUUGG-CGCGcUGCGCGGGcugcuGACGCa -3'
miRNA:   3'- cgAACCaGUGCaGCGCGCCU-----UUGUGg -5'
6887 5' -52.5 NC_001875.2 + 100875 0.66 0.975623
Target:  5'- cGCgaGGcgcagCGCG-CGCGUGG--GCGCCa -3'
miRNA:   3'- -CGaaCCa----GUGCaGCGCGCCuuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.