miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 5' -56.2 NC_001875.2 + 124871 0.66 0.842622
Target:  5'- -cCGCUGuucaAGCAgcGCGCCGUGGCGa--- -3'
miRNA:   3'- uaGCGAU----UCGU--CGCGGCACUGUgguu -5'
6900 5' -56.2 NC_001875.2 + 5926 0.66 0.842622
Target:  5'- -gCGUUGGGUAGCGCCGcgcaggugGGCGCg-- -3'
miRNA:   3'- uaGCGAUUCGUCGCGGCa-------CUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 69256 0.66 0.842622
Target:  5'- -gCGCUGGGCcgcGGCucgaGCCGUGGCGgCGg -3'
miRNA:   3'- uaGCGAUUCG---UCG----CGGCACUGUgGUu -5'
6900 5' -56.2 NC_001875.2 + 61622 0.66 0.842622
Target:  5'- --gGCUGugucGGCGGCGCCucgGGCGCCc- -3'
miRNA:   3'- uagCGAU----UCGUCGCGGca-CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 122916 0.66 0.842622
Target:  5'- -cCGCUGcuGCAGCGUCGUGGauuuUugCAAa -3'
miRNA:   3'- uaGCGAUu-CGUCGCGGCACU----GugGUU- -5'
6900 5' -56.2 NC_001875.2 + 18119 0.66 0.834138
Target:  5'- aGUCGCUcaucGGCuuuGUGCUGggcGACACCAu -3'
miRNA:   3'- -UAGCGAu---UCGu--CGCGGCa--CUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 111194 0.66 0.834138
Target:  5'- -gCGCUGGGCGGCGC----GCGCCGu -3'
miRNA:   3'- uaGCGAUUCGUCGCGgcacUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 65721 0.66 0.834138
Target:  5'- -cCGC-GGGCGGCGCCGccuCGCCGc -3'
miRNA:   3'- uaGCGaUUCGUCGCGGCacuGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 23638 0.66 0.834138
Target:  5'- cUUGCUGAGCGGgugcuCGCCGaGGC-CCAGg -3'
miRNA:   3'- uAGCGAUUCGUC-----GCGGCaCUGuGGUU- -5'
6900 5' -56.2 NC_001875.2 + 32814 0.66 0.834138
Target:  5'- --aGCUcGGCgaacGGCGCCGcuugcgagcgUGGCACCAAa -3'
miRNA:   3'- uagCGAuUCG----UCGCGGC----------ACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 125599 0.66 0.834138
Target:  5'- uGUCGCUacauggugGAGCGGCugGgCGUGuCGCCGAc -3'
miRNA:   3'- -UAGCGA--------UUCGUCG--CgGCACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 104701 0.66 0.825458
Target:  5'- uGUCGCUAAgGCuGGUGgUGUGGcCGCCAAa -3'
miRNA:   3'- -UAGCGAUU-CG-UCGCgGCACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 95731 0.66 0.825458
Target:  5'- -gUGCaUGAGCGGCGCCGc--CGCCGc -3'
miRNA:   3'- uaGCG-AUUCGUCGCGGCacuGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 50208 0.66 0.825458
Target:  5'- aAUCGCgcAGCAGCGCC-UGA-ACCc- -3'
miRNA:   3'- -UAGCGauUCGUCGCGGcACUgUGGuu -5'
6900 5' -56.2 NC_001875.2 + 21342 0.66 0.825458
Target:  5'- cUUGUUgacGAGCAGCGCCGUgugcuuGACGCgGu -3'
miRNA:   3'- uAGCGA---UUCGUCGCGGCA------CUGUGgUu -5'
6900 5' -56.2 NC_001875.2 + 11030 0.66 0.825458
Target:  5'- cGUCGUUGcuGCuGCGCCGUuugcgcuuguugGAUACCAGc -3'
miRNA:   3'- -UAGCGAUu-CGuCGCGGCA------------CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 82249 0.66 0.825458
Target:  5'- -gCGCUGguGGUAGCGCuCGUcGGCGCgCAGc -3'
miRNA:   3'- uaGCGAU--UCGUCGCG-GCA-CUGUG-GUU- -5'
6900 5' -56.2 NC_001875.2 + 2654 0.66 0.825458
Target:  5'- -aCGuCUAcuuGCGGCGCCGgcGGCGCCu- -3'
miRNA:   3'- uaGC-GAUu--CGUCGCGGCa-CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 83320 0.66 0.816589
Target:  5'- -cCGCgGGGCGcGCGCCGggcgGcGCGCCAAa -3'
miRNA:   3'- uaGCGaUUCGU-CGCGGCa---C-UGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 32874 0.66 0.816589
Target:  5'- -aCGCggaAAGCGGCGCCGguuccucuuAUACCGAg -3'
miRNA:   3'- uaGCGa--UUCGUCGCGGCac-------UGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.