Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6902 | 5' | -50.5 | NC_001875.2 | + | 108255 | 0.66 | 0.993672 |
Target: 5'- gGCUGCgGCAUcauUGGG-GUGUGCGCa -3' miRNA: 3'- gCGACG-CGUAcu-ACUUgCACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 63706 | 0.66 | 0.993093 |
Target: 5'- aGgUGCGCGUGAuugccucgccggaacUGGACGcGcUGCACa -3' miRNA: 3'- gCgACGCGUACU---------------ACUUGCaC-AUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 109082 | 0.66 | 0.992471 |
Target: 5'- cCGCUGUGUgccgGUGAUGugcuggagcgguGCGUGgccgGCGCa -3' miRNA: 3'- -GCGACGCG----UACUACu-----------UGCACa---UGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 73363 | 0.66 | 0.991575 |
Target: 5'- aUGCcGCGCuAUGGUGcGCuUGUACugGu -3' miRNA: 3'- -GCGaCGCG-UACUACuUGcACAUGugC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 43855 | 0.66 | 0.990338 |
Target: 5'- uGCUGCGC-----GGGCGUcgcGUACGCGg -3' miRNA: 3'- gCGACGCGuacuaCUUGCA---CAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 43762 | 0.66 | 0.990338 |
Target: 5'- uGCUGCGCGggcguuUGcgcaGACGUaacGUACGCGg -3' miRNA: 3'- gCGACGCGUacu---AC----UUGCA---CAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 125107 | 0.66 | 0.988963 |
Target: 5'- uGCUGCGCGUGAUGcgguuuAUGUcgccCGCGc -3' miRNA: 3'- gCGACGCGUACUACu-----UGCAcau-GUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 80272 | 0.67 | 0.98744 |
Target: 5'- aCGCcGCGCGUcGUGAACGgcucGCACu -3' miRNA: 3'- -GCGaCGCGUAcUACUUGCaca-UGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 119767 | 0.67 | 0.98189 |
Target: 5'- cCGgUGCGUcUGAcgGGcgACGUGUACGCu -3' miRNA: 3'- -GCgACGCGuACUa-CU--UGCACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 53513 | 0.67 | 0.979682 |
Target: 5'- uCGgUGCGCGUGuuuuUGGcgcACGUcGUGCGCu -3' miRNA: 3'- -GCgACGCGUACu---ACU---UGCA-CAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 62548 | 0.67 | 0.978982 |
Target: 5'- cCGCUGaCGUAUucgaacgugucgucGGUGuGCGUGUGCAUu -3' miRNA: 3'- -GCGAC-GCGUA--------------CUACuUGCACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 2267 | 0.68 | 0.977279 |
Target: 5'- uCGCUGCGggcCAUGuUGAcguCGUGaUGCGCGc -3' miRNA: 3'- -GCGACGC---GUACuACUu--GCAC-AUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 119667 | 0.68 | 0.970064 |
Target: 5'- aGCUGCGCAUucucagcauccugucGGUGAACcggcUGUuugGCGCGa -3' miRNA: 3'- gCGACGCGUA---------------CUACUUGc---ACA---UGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 110083 | 0.68 | 0.968824 |
Target: 5'- aCGCUGCGCGUGGaGGcCGccacGCGCGg -3' miRNA: 3'- -GCGACGCGUACUaCUuGCaca-UGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 26707 | 0.68 | 0.968824 |
Target: 5'- uGCUGCGCAUGAaccuUGAgu-UGaUGCACGc -3' miRNA: 3'- gCGACGCGUACU----ACUugcAC-AUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 83217 | 0.68 | 0.965563 |
Target: 5'- gGCUGCGCAgcagcggcaccUGAaacucaaaGAGCGUGUACcACu -3' miRNA: 3'- gCGACGCGU-----------ACUa-------CUUGCACAUG-UGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 36327 | 0.68 | 0.965563 |
Target: 5'- gCGCUGgGgcUGuUGcGCGUGUACGCGg -3' miRNA: 3'- -GCGACgCguACuACuUGCACAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 89208 | 0.68 | 0.96454 |
Target: 5'- gGCUGgGCGUGccaGAcaaggaguacacuuGCGUGUugGCGg -3' miRNA: 3'- gCGACgCGUACua-CU--------------UGCACAugUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 40171 | 0.69 | 0.96207 |
Target: 5'- aCGCgaUGCGCAUGG---GCGUgccGUACGCGu -3' miRNA: 3'- -GCG--ACGCGUACUacuUGCA---CAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 5936 | 0.69 | 0.96207 |
Target: 5'- gCGCcGCGCA-GGUGGGCGcggccucgcaGUACACGu -3' miRNA: 3'- -GCGaCGCGUaCUACUUGCa---------CAUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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