miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 51198 0.82 0.059272
Target:  5'- -cGGCGCGGUuCUGGCGCCGCccGUCGa -3'
miRNA:   3'- gaCCGCGCCGuGACCGUGGCG--CAGCa -5'
6923 5' -62.3 NC_001875.2 + 84169 0.69 0.40287
Target:  5'- --cGCGCGGCGCgccGCgGCCGCGUcCGUg -3'
miRNA:   3'- gacCGCGCCGUGac-CG-UGGCGCA-GCA- -5'
6923 5' -62.3 NC_001875.2 + 120965 0.69 0.428288
Target:  5'- --uGCGCGGCagcgccaccgacGC-GGcCACCGCGUCGUc -3'
miRNA:   3'- gacCGCGCCG------------UGaCC-GUGGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 96195 0.66 0.606966
Target:  5'- aUGGcCGCGcacuuGCGCUGcGCcagauaguCCGCGUCGg -3'
miRNA:   3'- gACC-GCGC-----CGUGAC-CGu-------GGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 57689 0.74 0.209958
Target:  5'- gCUGGCgGCGGCg--GGCGCCGCGcccUCGa -3'
miRNA:   3'- -GACCG-CGCCGugaCCGUGGCGC---AGCa -5'
6923 5' -62.3 NC_001875.2 + 79327 0.74 0.215037
Target:  5'- aUGaGCGCGGCGCugccuuUGGCGCCGCuguuuaccauGUCGg -3'
miRNA:   3'- gAC-CGCGCCGUG------ACCGUGGCG----------CAGCa -5'
6923 5' -62.3 NC_001875.2 + 50497 0.72 0.271786
Target:  5'- gUGcGCGCGGCACcagcGCGCCGCG-CGg -3'
miRNA:   3'- gAC-CGCGCCGUGac--CGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 113373 0.72 0.278079
Target:  5'- -cGGCGCGGCGCaaaaaaGGUguGCCGCGgCGUu -3'
miRNA:   3'- gaCCGCGCCGUGa-----CCG--UGGCGCaGCA- -5'
6923 5' -62.3 NC_001875.2 + 91883 0.71 0.332619
Target:  5'- gCUGGUGCGGCgGCgggucgGGCaACCGCG-CGc -3'
miRNA:   3'- -GACCGCGCCG-UGa-----CCG-UGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 9771 0.7 0.378429
Target:  5'- -aGGCcaagcgcacGCGGCACauccgGGCACUGCG-CGUg -3'
miRNA:   3'- gaCCG---------CGCCGUGa----CCGUGGCGCaGCA- -5'
6923 5' -62.3 NC_001875.2 + 59613 0.7 0.355004
Target:  5'- -gGGCGCuuuGGCggAUUGGCggacGCCGCGUCGc -3'
miRNA:   3'- gaCCGCG---CCG--UGACCG----UGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 41615 0.71 0.304412
Target:  5'- -gGGCGCgGGCAUcGGUAUCGgGUCGa -3'
miRNA:   3'- gaCCGCG-CCGUGaCCGUGGCgCAGCa -5'
6923 5' -62.3 NC_001875.2 + 125353 0.76 0.145459
Target:  5'- uUGGCGCGGCACUccgcguugGGCGCCGUaaUCGa -3'
miRNA:   3'- gACCGCGCCGUGA--------CCGUGGCGc-AGCa -5'
6923 5' -62.3 NC_001875.2 + 119454 0.7 0.355004
Target:  5'- -cGGCccgacgacgaGCGGCACcgUGGCACCcuCGUCGUc -3'
miRNA:   3'- gaCCG----------CGCCGUG--ACCGUGGc-GCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 90029 0.75 0.172951
Target:  5'- aCUGGcCGCGGCGCcGGCGCgCGUGcCGg -3'
miRNA:   3'- -GACC-GCGCCGUGaCCGUG-GCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 54796 0.71 0.297654
Target:  5'- -cGG-GCGGCACUaGCACCGCGacgCGg -3'
miRNA:   3'- gaCCgCGCCGUGAcCGUGGCGCa--GCa -5'
6923 5' -62.3 NC_001875.2 + 33037 0.7 0.362697
Target:  5'- --aGCGCGGCg--GGCGCCGCGcCGc -3'
miRNA:   3'- gacCGCGCCGugaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 58089 0.69 0.41971
Target:  5'- uCUGGCGCGuGCGCacGUugUuaGCGUCGUa -3'
miRNA:   3'- -GACCGCGC-CGUGacCGugG--CGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 69483 0.74 0.190668
Target:  5'- cCUGGCGCGcGacccaaACUGGCGCCGCGcCc- -3'
miRNA:   3'- -GACCGCGC-Cg-----UGACCGUGGCGCaGca -5'
6923 5' -62.3 NC_001875.2 + 95555 0.73 0.230908
Target:  5'- gUGGCuGCGGCGCauUGGCGCUcCGUUGUg -3'
miRNA:   3'- gACCG-CGCCGUG--ACCGUGGcGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.