miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 3' -59.6 NC_001875.2 + 50206 0.66 0.743085
Target:  5'- uGCUGCgagaacGUGucaacaaacaGCCGuuUGGCGCGGCGCGg -3'
miRNA:   3'- -CGGCGa-----CACc---------UGGU--ACUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 48787 0.66 0.743085
Target:  5'- uGgUGCUGUGGuccuacggcaGCCGcGAucaCGUGGCGCAc -3'
miRNA:   3'- -CgGCGACACC----------UGGUaCU---GCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 74849 0.66 0.743085
Target:  5'- gGCCGCUGcucGGcaaaACCGUcGugGCGGauuuGCAg -3'
miRNA:   3'- -CGGCGACa--CC----UGGUA-CugCGCCg---CGU- -5'
6928 3' -59.6 NC_001875.2 + 126068 0.66 0.743085
Target:  5'- uGCCGUaccaGGACgCGcUGaACGCGGUGCAa -3'
miRNA:   3'- -CGGCGaca-CCUG-GU-AC-UGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 93965 0.66 0.737323
Target:  5'- aGCCGCUGgcgcGGcCCGccguuuuguaauguuUGugGUGcGCGCGc -3'
miRNA:   3'- -CGGCGACa---CCuGGU---------------ACugCGC-CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 46177 0.66 0.734429
Target:  5'- gGCCGCguugGUGGcguucaagACCGcuucgagcucguugaGugGCGGCGCu -3'
miRNA:   3'- -CGGCGa---CACC--------UGGUa--------------CugCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 41439 0.66 0.733463
Target:  5'- gGCCGCUGcgcgcgcacaGGcGCCGgu-UGCGGCGCGc -3'
miRNA:   3'- -CGGCGACa---------CC-UGGUacuGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 30942 0.66 0.733463
Target:  5'- gGCCGCacaGGucucGCCAUGGCGCccacGCGCGc -3'
miRNA:   3'- -CGGCGacaCC----UGGUACUGCGc---CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 82993 0.66 0.732496
Target:  5'- cGCCGCUcGUcgccggcGGGCU-UGAaGCGGCGCc -3'
miRNA:   3'- -CGGCGA-CA-------CCUGGuACUgCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 19718 0.66 0.732496
Target:  5'- -gCGCUGUGGGCCGaGGC-CGuaaacacguugaaGCGCAa -3'
miRNA:   3'- cgGCGACACCUGGUaCUGcGC-------------CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 66189 0.66 0.723756
Target:  5'- aGCCGCgUGUcgucgGGACCGUGuuGUGGUuCAu -3'
miRNA:   3'- -CGGCG-ACA-----CCUGGUACugCGCCGcGU- -5'
6928 3' -59.6 NC_001875.2 + 29784 0.66 0.72278
Target:  5'- gGCCGCggGUGGACgggCGUGucaggcuACGCcGGCGaCAa -3'
miRNA:   3'- -CGGCGa-CACCUG---GUAC-------UGCG-CCGC-GU- -5'
6928 3' -59.6 NC_001875.2 + 122099 0.66 0.72278
Target:  5'- aCgGCgGUGGacgcucaacacguGCCAcgcuucgGGCGCGGCGCGg -3'
miRNA:   3'- cGgCGaCACC-------------UGGUa------CUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 88976 0.66 0.713971
Target:  5'- -gCGCUGgcGGACC-UGcgccUGCGGCGCGc -3'
miRNA:   3'- cgGCGACa-CCUGGuACu---GCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 53895 0.66 0.70412
Target:  5'- cGCCGCggcgcaaauaauUGUGGgcgcGCCGUugcgGGCGCguuGGCGCGc -3'
miRNA:   3'- -CGGCG------------ACACC----UGGUA----CUGCG---CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 11943 0.66 0.70412
Target:  5'- cGCCGaCUGUGcgcgcGACCGgcGGCGCGuuGCAa -3'
miRNA:   3'- -CGGC-GACAC-----CUGGUa-CUGCGCcgCGU- -5'
6928 3' -59.6 NC_001875.2 + 126621 0.66 0.70412
Target:  5'- uGgCGCaUGUcGAUCGUGGCGUcgGGCGCGu -3'
miRNA:   3'- -CgGCG-ACAcCUGGUACUGCG--CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 89935 0.66 0.703131
Target:  5'- uCCGC---GGGCCAcuauucgcgggcaUGGCGCGGCGaCAg -3'
miRNA:   3'- cGGCGacaCCUGGU-------------ACUGCGCCGC-GU- -5'
6928 3' -59.6 NC_001875.2 + 81308 0.66 0.698179
Target:  5'- cGCCGCcgGcGGcgccuccuccucgucAUCGUGccGCGCGGCGCGc -3'
miRNA:   3'- -CGGCGa-CaCC---------------UGGUAC--UGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 33569 0.66 0.694208
Target:  5'- cGCCGCgg-GGcACCAUgcccgagucggcGACGUGGCGg- -3'
miRNA:   3'- -CGGCGacaCC-UGGUA------------CUGCGCCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.