miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 3' -53.3 NC_001875.2 + 49351 0.66 0.96251
Target:  5'- gUGGGCggcggGCCGUGGUgcaacaUGCGGCGGc -3'
miRNA:   3'- aGCUUGag---CGGCGUCAaa----ACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 89386 0.66 0.96251
Target:  5'- gCGuGGCUCGCCGCA-----GCGGCc- -3'
miRNA:   3'- aGC-UUGAGCGGCGUcaaaaCGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 49725 0.66 0.96251
Target:  5'- cUCGGaaaacagguccACgUCGCCGUAGUcgcuggUGCGGCc- -3'
miRNA:   3'- -AGCU-----------UG-AGCGGCGUCAaa----ACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 49461 0.66 0.96251
Target:  5'- gUGGACggCGCCGUGGUUccGCGcGCGc -3'
miRNA:   3'- aGCUUGa-GCGGCGUCAAaaCGC-CGUc -5'
6932 3' -53.3 NC_001875.2 + 98904 0.66 0.96251
Target:  5'- aUCGAuuggCGCCGUAGcuc-GCGGCGc -3'
miRNA:   3'- -AGCUuga-GCGGCGUCaaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 88526 0.66 0.961441
Target:  5'- gCGGcacGCcCGCCGCGGcgUcguuuauuaacuugUUGCGGCGGc -3'
miRNA:   3'- aGCU---UGaGCGGCGUCa-A--------------AACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 102500 0.66 0.961079
Target:  5'- aCGGACcacaagcggugggCGCCGCAGUguccgUUUGUGcGCAa -3'
miRNA:   3'- aGCUUGa------------GCGGCGUCA-----AAACGC-CGUc -5'
6932 3' -53.3 NC_001875.2 + 92192 0.66 0.958863
Target:  5'- cCGGcccaaACUCGCgCGCGGUUcgcugcgcgccaUUGuCGGCAa -3'
miRNA:   3'- aGCU-----UGAGCG-GCGUCAA------------AAC-GCCGUc -5'
6932 3' -53.3 NC_001875.2 + 99686 0.66 0.958863
Target:  5'- gUUGAGCagcgcgucuUCGCCGCcGUUgagcgcuaUGCGGCGc -3'
miRNA:   3'- -AGCUUG---------AGCGGCGuCAAa-------ACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 98538 0.66 0.958863
Target:  5'- aCGcGCUCGCCaacccGCAGUgcuacUUUGUGGUg- -3'
miRNA:   3'- aGCuUGAGCGG-----CGUCA-----AAACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 57307 0.66 0.958105
Target:  5'- aCGGGCgcgCGUCGuCGGcgacgcaauugUUGCGGCAGc -3'
miRNA:   3'- aGCUUGa--GCGGC-GUCaa---------AACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 72570 0.66 0.954979
Target:  5'- gCGGGCgcgggCGCUGCGGg--UGCGGgCGc -3'
miRNA:   3'- aGCUUGa----GCGGCGUCaaaACGCC-GUc -5'
6932 3' -53.3 NC_001875.2 + 103110 0.66 0.954979
Target:  5'- gUCGAucgugGCUCGCUugGCGGcg--GCGGCGc -3'
miRNA:   3'- -AGCU-----UGAGCGG--CGUCaaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 21692 0.66 0.954979
Target:  5'- aCGAGCgCGaCGCGGUgcUGCGGUc- -3'
miRNA:   3'- aGCUUGaGCgGCGUCAaaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 56067 0.66 0.950855
Target:  5'- uUUGAGCUCGCUGCG---UUGCuugaGCAGc -3'
miRNA:   3'- -AGCUUGAGCGGCGUcaaAACGc---CGUC- -5'
6932 3' -53.3 NC_001875.2 + 23139 0.66 0.946485
Target:  5'- uUUGggUUUGCgCGCAGUcgaaggGCGGCu- -3'
miRNA:   3'- -AGCuuGAGCG-GCGUCAaaa---CGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 99917 0.66 0.946485
Target:  5'- aCGAGCgggccgCGCgCGCGGUgcagcGCGGCc- -3'
miRNA:   3'- aGCUUGa-----GCG-GCGUCAaaa--CGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 38803 0.66 0.946485
Target:  5'- uUCGGcgcugcaauuGCUCGUgguugUGCAGUUgcGCGGCGa -3'
miRNA:   3'- -AGCU----------UGAGCG-----GCGUCAAaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 94237 0.66 0.941867
Target:  5'- gCGAGCaCGCCGCcg---UGCGGCc- -3'
miRNA:   3'- aGCUUGaGCGGCGucaaaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 94052 0.67 0.936998
Target:  5'- -aGGACUcguccaagucacCGCCGUgaaauuggcgcaGGUUUaGCGGCAGg -3'
miRNA:   3'- agCUUGA------------GCGGCG------------UCAAAaCGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.