miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6943 3' -51.6 NC_001875.2 + 77396 0.66 0.976361
Target:  5'- cGGCGCCgcGGCUaacgACCgccacgcGCUGUUC-GGCg -3'
miRNA:   3'- uUUGCGG--UCGA----UGGa------CGACAAGuUCG- -5'
6943 3' -51.6 NC_001875.2 + 106668 0.66 0.976361
Target:  5'- cAAUGCCGGCguCCUGCggGUagUUggGCu -3'
miRNA:   3'- uUUGCGGUCGauGGACGa-CA--AGuuCG- -5'
6943 3' -51.6 NC_001875.2 + 2703 0.66 0.976361
Target:  5'- cAGACuCCAGCaucACCUGCUccaaCAAGCg -3'
miRNA:   3'- -UUUGcGGUCGa--UGGACGAcaa-GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 75470 0.66 0.974752
Target:  5'- gAAGCGCCGGUuugacaacgggcaugUcgcGCCUGCgucgCAGGCg -3'
miRNA:   3'- -UUUGCGGUCG---------------A---UGGACGacaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 44780 0.66 0.973635
Target:  5'- cGAGCGCC-GCUGCUUGCUaaacGUUUuGGa -3'
miRNA:   3'- -UUUGCGGuCGAUGGACGA----CAAGuUCg -5'
6943 3' -51.6 NC_001875.2 + 74364 0.66 0.973635
Target:  5'- uAGACgGCguGCgcgGCCgcgGCgcGUUCAGGCg -3'
miRNA:   3'- -UUUG-CGguCGa--UGGa--CGa-CAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 51179 0.66 0.973635
Target:  5'- -uGCGCCAGUUugCccacgacgGCgcgGUUCuGGCg -3'
miRNA:   3'- uuUGCGGUCGAugGa-------CGa--CAAGuUCG- -5'
6943 3' -51.6 NC_001875.2 + 72565 0.66 0.970688
Target:  5'- cGGGCGCgGGCgcggGCgCUGCggGUgCGGGCg -3'
miRNA:   3'- -UUUGCGgUCGa---UG-GACGa-CAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 33200 0.66 0.967512
Target:  5'- cAGCGCCucGCUGCCgGCaaacgCGGGCg -3'
miRNA:   3'- uUUGCGGu-CGAUGGaCGacaa-GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 40203 0.66 0.967512
Target:  5'- ---gGCCAGCUGCUgcgcgGCUaUUCGGcGCa -3'
miRNA:   3'- uuugCGGUCGAUGGa----CGAcAAGUU-CG- -5'
6943 3' -51.6 NC_001875.2 + 62397 0.66 0.964099
Target:  5'- cGugGCCGGCgcgcaaacGCCgGCg--UCAAGCa -3'
miRNA:   3'- uUugCGGUCGa-------UGGaCGacaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 123002 0.66 0.964099
Target:  5'- -uGCGCCAGCUgaAUgaGUUGgugUUggGCg -3'
miRNA:   3'- uuUGCGGUCGA--UGgaCGACa--AGuuCG- -5'
6943 3' -51.6 NC_001875.2 + 95740 0.66 0.964099
Target:  5'- cGGCGCCGccGCcGCgUGCUGccgcgCGAGCg -3'
miRNA:   3'- uUUGCGGU--CGaUGgACGACaa---GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 108583 0.66 0.964099
Target:  5'- uGGCGCUGcGCUGCCcgucGCUGUUCuccgaccAGCu -3'
miRNA:   3'- uUUGCGGU-CGAUGGa---CGACAAGu------UCG- -5'
6943 3' -51.6 NC_001875.2 + 39674 0.66 0.964099
Target:  5'- cGGCGCgCGGCggcgAgCUGCUagaGUUUGAGCg -3'
miRNA:   3'- uUUGCG-GUCGa---UgGACGA---CAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 25343 0.66 0.964099
Target:  5'- cGACGCgGGCUacACCggcgaGCUGUUUuucaAAGCc -3'
miRNA:   3'- uUUGCGgUCGA--UGGa----CGACAAG----UUCG- -5'
6943 3' -51.6 NC_001875.2 + 128407 0.66 0.964099
Target:  5'- aGGACGCCAGCUuCCUG-UGUU---GCu -3'
miRNA:   3'- -UUUGCGGUCGAuGGACgACAAguuCG- -5'
6943 3' -51.6 NC_001875.2 + 71363 0.67 0.960444
Target:  5'- cGACGCUAGCacaaugaAUUUGCUGgggcuccUCAAGCa -3'
miRNA:   3'- uUUGCGGUCGa------UGGACGACa------AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 77329 0.67 0.958912
Target:  5'- cGGugGCCGGCcccaacuaccgcgACCUGgaaCUGgUCAAGCg -3'
miRNA:   3'- -UUugCGGUCGa------------UGGAC---GACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 65701 0.67 0.956539
Target:  5'- -cACGCCGGCcgACCa-CUGUUCcgcGGGCg -3'
miRNA:   3'- uuUGCGGUCGa-UGGacGACAAG---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.