miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 3' -55.1 NC_001875.2 + 120882 0.66 0.909774
Target:  5'- -cAGUGCauggACGCGUugUCCGACuuuaacgugACCg -3'
miRNA:   3'- uuUCGCGg---UGUGCAugAGGCUG---------UGGa -5'
6952 3' -55.1 NC_001875.2 + 41805 0.66 0.909774
Target:  5'- ---cCGCCgGCACGcGCgCCGGCGCCg -3'
miRNA:   3'- uuucGCGG-UGUGCaUGaGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 49534 0.66 0.909774
Target:  5'- ----aGUCGCugGUGCUggacuuggggcCCGACGCCa -3'
miRNA:   3'- uuucgCGGUGugCAUGA-----------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 57831 0.66 0.903458
Target:  5'- --uGCGCCGCG-GUGCUCuCG-UACCg -3'
miRNA:   3'- uuuCGCGGUGUgCAUGAG-GCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 115557 0.66 0.903458
Target:  5'- -uGGCGCaCAUggACGUGCggucgCCgGGCACCa -3'
miRNA:   3'- uuUCGCG-GUG--UGCAUGa----GG-CUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 12967 0.66 0.903458
Target:  5'- --cGCGgCGgGCGUggGCUCCG-CGCCg -3'
miRNA:   3'- uuuCGCgGUgUGCA--UGAGGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 53413 0.66 0.903458
Target:  5'- cAAGUuuuuGCCGCACGUgcgguuuucggGCUCCGuguacCACCa -3'
miRNA:   3'- uUUCG----CGGUGUGCA-----------UGAGGCu----GUGGa -5'
6952 3' -55.1 NC_001875.2 + 98034 0.66 0.896895
Target:  5'- cGAGCGCCgaACGCGUG-UUCGGCAUg- -3'
miRNA:   3'- uUUCGCGG--UGUGCAUgAGGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 111814 0.66 0.896226
Target:  5'- -cGGCGCCugGC-UGCUCCGcgugacgGCugCg -3'
miRNA:   3'- uuUCGCGGugUGcAUGAGGC-------UGugGa -5'
6952 3' -55.1 NC_001875.2 + 66639 0.66 0.89009
Target:  5'- cAAGCGCaUGCugGagcugcGCUCCGugACCa -3'
miRNA:   3'- uUUCGCG-GUGugCa-----UGAGGCugUGGa -5'
6952 3' -55.1 NC_001875.2 + 32577 0.66 0.89009
Target:  5'- -cAGUGCCGCGCGcACcUCGACuaGCCg -3'
miRNA:   3'- uuUCGCGGUGUGCaUGaGGCUG--UGGa -5'
6952 3' -55.1 NC_001875.2 + 128017 0.66 0.89009
Target:  5'- --cGCGCCG-GCGUGCgCCGACgacgGCCg -3'
miRNA:   3'- uuuCGCGGUgUGCAUGaGGCUG----UGGa -5'
6952 3' -55.1 NC_001875.2 + 118052 0.66 0.89009
Target:  5'- --cGCGCCacccGCACGaUugUCCGACAa-- -3'
miRNA:   3'- uuuCGCGG----UGUGC-AugAGGCUGUgga -5'
6952 3' -55.1 NC_001875.2 + 119056 0.66 0.883047
Target:  5'- -cGGCGUgCGCAUGUGCg-CGGCGCCc -3'
miRNA:   3'- uuUCGCG-GUGUGCAUGagGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 126347 0.66 0.883047
Target:  5'- --uGCGCCGguCGUGCUgUG-CACCg -3'
miRNA:   3'- uuuCGCGGUguGCAUGAgGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 122131 0.66 0.883047
Target:  5'- cGGGCGCgGCGCGg---CCGGCGCg- -3'
miRNA:   3'- uUUCGCGgUGUGCaugaGGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 30659 0.66 0.883047
Target:  5'- uGGGCGCCgGCACGUAauugaCCaGCGCCa -3'
miRNA:   3'- uUUCGCGG-UGUGCAUga---GGcUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 120646 0.66 0.883047
Target:  5'- -cGGCGCgGCGuCGUGCUCCacaacGGCGCg- -3'
miRNA:   3'- uuUCGCGgUGU-GCAUGAGG-----CUGUGga -5'
6952 3' -55.1 NC_001875.2 + 31766 0.66 0.883047
Target:  5'- uAGGUGCCaaGCGCGUGCcCCagcaGCACCg -3'
miRNA:   3'- uUUCGCGG--UGUGCAUGaGGc---UGUGGa -5'
6952 3' -55.1 NC_001875.2 + 70223 0.66 0.880888
Target:  5'- cGAGGCGCCGCcgacacagcccgaaGCGccg-CCGGCGCCc -3'
miRNA:   3'- -UUUCGCGGUG--------------UGCaugaGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.