miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 3' -57.2 NC_001875.2 + 42524 0.66 0.81021
Target:  5'- aUGAGCGagccgaagCGCAUggugGCGgCGCCAu -3'
miRNA:   3'- cACUCGCaaa-----GCGUGa---CGCgGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 70845 0.66 0.81021
Target:  5'- -cGAGUGcuauUUUUGCGgUGCGCCagcGCCGAc -3'
miRNA:   3'- caCUCGC----AAAGCGUgACGCGG---CGGUU- -5'
6958 3' -57.2 NC_001875.2 + 80619 0.66 0.81021
Target:  5'- gGUGGGCGcgcggaacgCGCGCUcgacggGCGgCGCCAGa -3'
miRNA:   3'- -CACUCGCaaa------GCGUGA------CGCgGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 8511 0.66 0.81021
Target:  5'- uGUGGGCGccgCGCACUGCaaCGCg-- -3'
miRNA:   3'- -CACUCGCaaaGCGUGACGcgGCGguu -5'
6958 3' -57.2 NC_001875.2 + 73214 0.66 0.801166
Target:  5'- gGUGcAGCGccUCaGCACUG-GCCGUCAGg -3'
miRNA:   3'- -CAC-UCGCaaAG-CGUGACgCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 11552 0.66 0.801166
Target:  5'- ---cGCcaaUUUCGUAC-GCGCCGCCGAa -3'
miRNA:   3'- cacuCGc--AAAGCGUGaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 110283 0.66 0.801166
Target:  5'- -gGAGCGcg-CGgGCUGCcccGUCGCCGAg -3'
miRNA:   3'- caCUCGCaaaGCgUGACG---CGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 99826 0.66 0.791962
Target:  5'- --cAGCaGUUcgcagUGCGCUGCGUCGCCGc -3'
miRNA:   3'- cacUCG-CAAa----GCGUGACGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 11924 0.66 0.791962
Target:  5'- --aGGUGUUUUGCGCgcgGCG-CGCCGAc -3'
miRNA:   3'- cacUCGCAAAGCGUGa--CGCgGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 18451 0.66 0.782609
Target:  5'- ---cGCGUggCGCGCgaaucgcGCGCCGCUGAc -3'
miRNA:   3'- cacuCGCAaaGCGUGa------CGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 5001 0.66 0.773114
Target:  5'- cUGuGCGgcacuugUGCACuuUGCGCCGCCu- -3'
miRNA:   3'- cACuCGCaaa----GCGUG--ACGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 67854 0.66 0.773114
Target:  5'- uUGGGCGa--CGgGgUGCGUCGCCAGa -3'
miRNA:   3'- cACUCGCaaaGCgUgACGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 42758 0.66 0.773114
Target:  5'- gGUGAGCGg--CGCGCUcGgGUCgGCCGu -3'
miRNA:   3'- -CACUCGCaaaGCGUGA-CgCGG-CGGUu -5'
6958 3' -57.2 NC_001875.2 + 114972 0.66 0.763489
Target:  5'- -aGaAGCGg-UCGCGCUgGCGgCGCCGAu -3'
miRNA:   3'- caC-UCGCaaAGCGUGA-CGCgGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 113115 0.66 0.762519
Target:  5'- gGUGAGCGUUuugauggcaaUCcuguucauggaguGCACcaGCGCCGCCu- -3'
miRNA:   3'- -CACUCGCAA----------AG-------------CGUGa-CGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 68582 0.67 0.753741
Target:  5'- ---cGCGUggCGcCGCUG-GCCGCCGAg -3'
miRNA:   3'- cacuCGCAaaGC-GUGACgCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 102023 0.67 0.753741
Target:  5'- cUGcAGCGUgcCGUugacccaUGCGCCGCCAGc -3'
miRNA:   3'- cAC-UCGCAaaGCGug-----ACGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 70332 0.67 0.753741
Target:  5'- -cGAGCacg-CGgACUGCGgCGCCGAg -3'
miRNA:   3'- caCUCGcaaaGCgUGACGCgGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 39190 0.67 0.743882
Target:  5'- cGUG-GCGUUUa-CGgUGCGCCGCUAc -3'
miRNA:   3'- -CACuCGCAAAgcGUgACGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 31685 0.67 0.743882
Target:  5'- cGUGccGGCGUggacCGcCGCUugcGCGCCGCCGg -3'
miRNA:   3'- -CAC--UCGCAaa--GC-GUGA---CGCGGCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.